TCONS_00000069-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000069-protein
Unique NameTCONS_00000069-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length545

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000069-protein ID=TCONS_00000069-protein|Name=TCONS_00000069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp
LVSNFKMEITKFSVLWTEVDRNRAAQRPSLSMFIANDTSTPSTHVRRRGS
VQSINSDTDSRGVYDQKQYKRRRRRTWERGETENSLKRNPNNAPRIRINV
RGRKYETYIDTLDRFPDTLLGNKELRNQYYNERKEEIVLGRNYEVFEAVL
FYYQSNGILARPAWVSEKDFEKELKFYQLQPSESEKLRKEKEAQKQAAKT
LASERRPAYQKLIWNLMEHPRSSTPAFTCAILSIFTIIISVVVICLETMS
SITDDPDKKRGYINRKVLFYLETTVMIWFTMEYLLRIISAPRTFKFILSP
TGIIDLVVILPYYINIIIGEEIRSFNLAVFRIVRMFRVFRIFKLTRYSTG
LKVLGRTILESFGQLVALFLCLFLSAILFSSCLFFIEHDSLDHNSEVFIS
IPDTFWYVIITMTSVGYGDVVPRTLIGRVVAAFCMVTGIIVLLCLPTPVF
VTHFGRFYEDVISRPATEQEEDDELTDSEIWRNGEHNLMIPRWVNDDAWK
EKIRTDVNQNLTLPGLNVYLSTSNLFLSRACSQEVLHSIHNSPSK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000035XLOC_000035Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000069TCONS_00000069Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028325VG_K_chnl
IPR005821Ion_trans_dom
IPR003131T1-type_BTB
IPR011333SKP1/BTB/POZ
Vocabulary: Biological Process
TermDefinition
GO:0006813potassium ion transport
GO:0055085transmembrane transport
GO:0006811ion transport
GO:0051260protein homooligomerization
Vocabulary: Molecular Function
TermDefinition
GO:0005249voltage-gated potassium channel activity
GO:0005216ion channel activity
Vocabulary: Cellular Component
TermDefinition
GO:0008076voltage-gated potassium channel complex
GO:0016020membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006811 ion transport
biological_process GO:0006813 potassium ion transport
biological_process GO:0051260 protein homooligomerization
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0008076 voltage-gated potassium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005249 voltage-gated potassium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 184..204
NoneNo IPR availableGENE3D1.20.120.350coord: 226..363
e-value: 7.1E-30
score: 103.0
NoneNo IPR availableGENE3D1.20.5.110coord: 419..454
e-value: 7.0E-9
score: 34.7
NoneNo IPR availableGENE3D3.30.710.10coord: 83..207
e-value: 1.4E-16
score: 59.9
NoneNo IPR availableGENE3D1.10.287.70coord: 364..417
e-value: 1.7E-13
score: 50.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..93
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 225..443
IPR028325Voltage-gated potassium channelPRINTSPR00169KCHANNELcoord: 270..293
score: 40.46
coord: 296..316
score: 44.48
coord: 136..155
score: 37.68
coord: 364..387
score: 35.18
coord: 220..248
score: 42.69
coord: 427..453
score: 18.21
coord: 335..361
score: 54.64
coord: 398..420
score: 61.41
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 229..460
e-value: 4.0E-33
score: 114.6
IPR003131Potassium channel tetramerisation-type BTB domainPFAMPF02214BTB_2coord: 96..184
e-value: 1.4E-18
score: 66.9
IPR011333SKP1/BTB/POZ domainSUPERFAMILY54695POZ domaincoord: 95..182

Blast
[Close]
BLAST of TCONS_00000069-protein vs. Swiss-Prot (Human)
Match: KCNA1 (Potassium voltage-gated channel subfamily A member 1 OS=Homo sapiens GN=KCNA1 PE=1 SV=2)

HSP 1 Score: 279.256 bits (713), Expect = 1.087e-87
Identity = 153/405 (37.78%), Postives = 237/405 (58.52%), Query Frame = 0 
Query:   95 RIRINVRGRKYETYIDTLDRFPDTLLGNKELRNQYYNERKEEIVLGRNYEVFEAVLFYYQSNGILARPAWVSEKDFEKELKFYQLQPSESEKLRKEKEAQKQAAKTLASERRPAYQKLIWNLMEHPRSSTPAFTCAILSIFTIIISVVVICLETMSSITDDPDKKRGYINR--------------KVLFYLETTVMIWFTMEYLLRIISAPRTFKFILSPTGIIDLVVILPYYINIIIGEEI----------RSFNLAVFRIVRMFRVFRIFKLTRYSTGLKVLGRTILESFGQLVALFLCLFLSAILFSSCLFFIEHDSLDHNSEVFISIPDTFWYVIITMTSVGYGDVVPRTLIGRVVAAFCMVTGIIVLLCLPTPVFVTHFGRFYEDVISRPATEQEEDDEL 475
            R+ IN+ G ++ET + TL +FP+TLLGN + R +Y++  + E    RN   F+A+L+YYQS G L RP  V    F +E+KFY+L     EK R+++   K+  + L  +    YQ+ +W L E+P SS PA   AI+S+  I+IS+V+ CLET+  + DD D   G ++R                 F +ET  +IWF+ E ++R  + P    F  +    ID+V I+PY+I   +G EI          ++ +LA+ R++R+ RVFRIFKL+R+S GL++LG+T+  S  +L  L   LF+  ILFSS ++F E +  + +   F SIPD FW+ +++MT+VGYGD+ P T+ G++V + C + G++  + LP PV V++F  FY        TE EE  +L
Sbjct:   38 RVVINISGLRFETQLKTLAQFPNTLLGNPKKRMRYFDPLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDMFSEEIKFYELGEEAMEKFREDEGFIKEEERPLPEKE---YQRQVWLLFEYPESSGPARVIAIVSVMVILISIVIFCLETLPELKDDKDFT-GTVHRIDNTTVIYNSNIFTDPFFIVETLCIIWFSFELVVRFFACPSKTDFFKNIMNFIDIVAIIPYFIT--LGTEIAEQEGNQKGEQATSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEAEEAESH---FSSIPDAFWWAVVSMTTVGYGDMYPVTIGGKIVGSLCAIAGVLT-IALPVPVIVSNFNYFYHR-----ETEGEEQAQL 427
The following BLAST results are available for this feature:
BLAST of TCONS_00000069-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KCNA11.087e-8737.78Potassium voltage-gated channel subfamily A member... [more]
back to top