TCONS_00000172-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00000172-protein
Unique NameTCONS_00000172-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00000172-protein ID=TCONS_00000172-protein|Name=TCONS_00000172-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MDYLFLIPKVSGNIVDHFKIIEDGFHINTADHQESSTCSSVIQVTNNFRF
LDKHRIKTTTTPPNKNDVKTNSDISFRYGQILICKVYLGKSCAVNNDKRL
AESLYPGHQSVYRTKKHLATSCPSKVKKSLSTSATPQEYCECTARKCVWY
LFDPDLVLPEYIVDFEYLSTVTPPMMSVFSELSKPTMSEEIRQQRFTEMC
TKKPEEDTTDNNVLNLEPIIASRPRLTFLTEEMILKQSGQTYLNKITELN
LHGCGLTKGKMLSSLSNIKKLVLSFNELTTMADLGGNSTLEYLDVSYNQI
TGMEGFKV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000100XLOC_000100Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00000172TCONS_00000172Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001611Leu-rich_rpt
IPR032675L_dom-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.228.10coord: 12..171
e-value: 6.4E-10
score: 38.3
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 287..302
e-value: 0.0048
score: 16.7
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 173..307
e-value: 2.1E-13
score: 48.9
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 240..303

Blast
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BLAST of TCONS_00000172-protein vs. Swiss-Prot (Human)
Match: LRRC9 (Leucine-rich repeat-containing protein 9 OS=Homo sapiens GN=LRRC9 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 1.085e-40
Identity = 85/233 (36.48%), Postives = 137/233 (58.80%), Query Frame = 0 
Query:   76 FRYGQILICKVYLGKSCAVNNDKRLAESLYPGHQSVYRTKKHLATSCPSKVKKSLSTSATPQEYCECTARKCVWYLFDPDLVLPEYIVDFEYLSTV-TPPMMSVFSELSKPTMSEEIRQQRFTEMCTKKPEEDTTDNNVLNLEPIIASRPRLTFLTEEMILKQSGQTYLNKITELNLHGCGLTKGKMLSSLSNIKKLVLSFNELTTMADLGGNSTLEYLDVSYNQITGMEGFK 307
            FR+G +LI KV+LG+S   +  + +++S YP   SV+  +K+L  S               Q  C+C+ R+C W++FD DLVLPEY+V+FEY++ V  P + SVF+ +    + EE ++     + +K   +   D+ V+ +EP I +RP+L  L ++ IL  +  +  + I  LNLHG  L+K + LS L+ ++KL +SFNE T + D+     LEYLD S+N +  +EGF+
Sbjct:  544 FRHGILLITKVFLGQSVQAHEKESISQSNYPMVNSVFIPRKYLLNS------------VMGQRNCDCSVRQCKWFVFDHDLVLPEYVVEFEYITMVKAPSLFSVFNNV----ILEESKKNPEVSVFSK---DLKFDDEVIKMEPRIKARPKLISLDDKTILSLAKTSVYSHIVSLNLHGNSLSKLRDLSKLTGLRKLNISFNEFTCLDDVYHLYNLEYLDASHNHVITLEGFR 757
The following BLAST results are available for this feature:
BLAST of TCONS_00000172-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRRC91.085e-4036.48Leucine-rich repeat-containing protein 9 OS=Homo s... [more]
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