TCONS_00001201-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001201-protein
Unique NameTCONS_00001201-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1599

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001201-protein ID=TCONS_00001201-protein|Name=TCONS_00001201-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1599bp
IEKNGLWSWTDSSRSIYTNWGKEVDNKNNRHDCVYIDQEEGKWKDGNCTS
SKPFLCKMKTESCPSEWNNLKLNSVVGCYKLFNDDTTWEKAEQRCKAENA
HLASVASEDEQTMIYQFHSSTSYWIGFNDRENEGDWLWSDRLTSSYTNWA
DNAPNNGGYSCASVGKSGKWHDGKCNEKLNVVCKKKGPKPEKTDGYNEDG
VLLPVSRLLENDETAPSHLYDDKDKSSPVVPLNFWPLLKDSKLGMAGNHP
LAVNEPQNVKIIPGGVLLDGERSFLDAGDFHGHCIGDPEKCNKGFSVALQ
VKFDPVVLGYKKPHYVIDTSGRGRGFAIYIQNGKLHYKVVTDGGSWELET
RLTVSLWQDIVLTWKNPSGLHVYVNGAFMDYTNITKTVDINTKMVTTTKL
LIGRRSIDDRAPCTKMAVGSVVLFFKQLSVEDVPYAFTYGDTVVAYTRFF
MTDIENSEIPGAAEFVEKSITNIDGGIFVDGDTSDSVKPHAYLQLEDFPD
VIYNVQKARHGFAVSFKIKFDQRDRDYKEPRYILDTGGHNGGMKGISVYL
VNDNMYFQVIRSSDEDIMIWKVRVPIYTIRWQEVVMTWRLDKGLWIYVDG
MFRGHTLSPQPLPKDDLSTPKRLTIGRKNSGPEKSGAVFGFSSLAIFGRY
LSRTDSEKVFGNTDNPYQGIIREVWKNTPGEELDKLEDNPDYPNNPTTIE
IIENFDAPFNVESNYGSKLKGYFIAPETGNNTFYLSCSRACALYLSKDET
GKTKQKILTLNKPTEHNVWNKYDNQSSEAIFLVAGKYYYLEAIQKGVDSS
DSLSVGVKLPTGRYQRPINKENLQWRLPGNPHAGLVREVWYNIPGYSIED
LTSDSNFPNRPSSIEILDKFDAPFNYEDNYGSKVSGYFHAPSSGEYTFYM
ATDSSGELWLSSNENADSLKKIVTLSSWTDHNQWTKYPEQKSDKVFLVAG
KYYYIRLYMKADKLGDCASVAVEMPDGTFEGPIKKKHLSWRLIGSNEGPG
PKEVVEELPKPVGLYPLNENTLKDMITKNVELKNAEVTKGPGDLPKSAIE
LKGSQSSYLEIANNGKLDARKSITILTNIFPTGDNGPIVAYDPMGNGVHL
WQYDKTQLFVRFTLRGSNGNMTLEPLATRVLQMKKWNQVGASYDNNTGVA
QLWHDGKMVKSRNIGQVDLATDQNIRIGAVQNDKRYFEGKISCLQIYDIA
LREKEIGELRVCPKANLKDEKQDAKSAVNNTHNAGVSKSSLPEALSSLDA
DVASGASEWFDEATEAGAETRIGDETEEELVATRCQPNPCSNEGVCQDDE
KKIDGYVCMCPAEFTGRRCQVSKQRAENPVVKRTAIPTTTVTNDNTTTNL
LNAITTNPTNASIAENVTKSDESKEDISLLYQKLGCYKDDPSNHDLKTKV
DLKRTTQEDCAKACAMADKSYSYFGLQNGTSCFCGKDHGKYGKLGDEACN
MTCNGNEAEKCGGSEANNVFFYGLGTNYTVKTFTGKPLGAGTDAKIYFEL
VGDRGSSDFRQLDPSPAKYEPGSEDIQTFLLPDLGKLKRMKILHDNTGTA
PSWFLKKVQVTDEEGGSYEFPCDEWLSDTKGGGKLERELIAKSNIPTPS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000652XLOC_000652Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001201TCONS_00001201Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011658PA14_dom
IPR001304C-type_lectin-like
IPR000742EGF-like_dom
IPR002889WSC_carb-bd
IPR001024PLAT/LH2_dom
IPR008979Galactose-bd-like
IPR016186C-type_lectin-like/link
IPR013032EGF-like_CS
IPR018378C-type_lectin_CS
IPR013320ConA-like_dom
IPR016187CTDL_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1214..1234
NoneNo IPR availableGENE3D2.10.25.10coord: 1277..1323
e-value: 1.1E-10
score: 40.8
NoneNo IPR availableGENE3D2.60.120.200coord: 283..436
e-value: 9.8E-10
score: 38.2
NoneNo IPR availableGENE3D3.90.182.10coord: 665..820
e-value: 2.8E-14
score: 52.9
NoneNo IPR availablePFAMPF13385Laminin_G_3coord: 291..432
e-value: 1.8E-7
score: 31.3
coord: 1055..1206
e-value: 5.1E-15
score: 55.8
NoneNo IPR availableGENE3D2.60.120.200coord: 445..664
e-value: 5.1E-12
score: 45.8
NoneNo IPR availableGENE3D2.60.120.200coord: 1008..1210
e-value: 1.2E-23
score: 83.8
NoneNo IPR availableCDDcd00054EGF_CAcoord: 1285..1320
e-value: 5.81491E-7
score: 47.2462
NoneNo IPR availableCDDcd00037CLECTcoord: 78..185
e-value: 8.58945E-30
score: 115.795
NoneNo IPR availableCDDcd00037CLECTcoord: 1..58
e-value: 3.98105E-11
score: 61.0965
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 1283..1322
NoneNo IPR availableSUPERFAMILY56988Anthrax protective antigencoord: 885..957
IPR011658PA14 domainSMARTSM00758pa14_novelcoord: 842..985
e-value: 0.003
score: 24.0
IPR011658PA14 domainPFAMPF07691PA14coord: 877..982
e-value: 4.3E-11
score: 42.7
IPR001304C-type lectin-likeSMARTSM00034CLECT_2coord: 63..184
e-value: 7.5E-27
score: 105.2
IPR001304C-type lectin-likePFAMPF00059Lectin_Ccoord: 86..185
e-value: 1.0E-19
score: 71.2
coord: 3..57
e-value: 2.3E-7
score: 31.4
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 1..57
score: 13.709
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 78..184
score: 23.386
IPR000742EGF-like domainSMARTSM00181egf_5coord: 1284..1320
e-value: 1.6E-5
score: 34.3
IPR000742EGF-like domainPFAMPF00008EGFcoord: 1285..1318
e-value: 3.2E-6
score: 27.2
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 1281..1320
score: 18.941
IPR002889Carbohydrate-binding WSCSMARTSM00321SLG_2coord: 1384..1473
e-value: 7.9E-9
score: 45.3
IPR002889Carbohydrate-binding WSCPFAMPF01822WSCcoord: 1384..1463
e-value: 3.1E-13
score: 49.6
IPR002889Carbohydrate-binding WSCPROSITEPS51212WSCcoord: 1380..1473
score: 10.408
IPR001024PLAT/LH2 domainSMARTSM00308LH2_4coord: 1476..1592
e-value: 6.0E-7
score: 39.1
IPR001024PLAT/LH2 domainPFAMPF01477PLATcoord: 1478..1582
e-value: 9.8E-19
score: 68.0
IPR001024PLAT/LH2 domainGENE3D2.60.60.20coord: 1474..1597
e-value: 5.3E-30
score: 103.6
IPR001024PLAT/LH2 domainPROSITEPS50095PLATcoord: 1476..1590
score: 30.551
IPR001024PLAT/LH2 domainSUPERFAMILY49723Lipase/lipooxygenase domain (PLAT/LH2 domain)coord: 1476..1583
IPR008979Galactose-binding domain-likeGENE3D2.60.120.260coord: 821..973
e-value: 3.0E-19
score: 68.8
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 1..60
e-value: 1.4E-12
score: 47.3
IPR016186C-type lectin-like/link domainGENE3D3.10.100.10coord: 61..196
e-value: 1.1E-35
score: 122.2
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 1308..1319
IPR018378C-type lectin, conserved sitePROSITEPS00615C_TYPE_LECTIN_1coord: 33..56
IPR018378C-type lectin, conserved sitePROSITEPS00615C_TYPE_LECTIN_1coord: 161..183
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 1008..1209
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 474..654
IPR013320Concanavalin A-like lectin/glucanase domainSUPERFAMILY49899Concanavalin A-like lectins/glucanasescoord: 248..433
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 4..64
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 63..186

Blast
[Close]
BLAST of TCONS_00001201-protein vs. Swiss-Prot (Human)
Match: PGCA (Aggrecan core protein OS=Homo sapiens GN=ACAN PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 6.623e-19
Identity = 48/135 (35.56%), Postives = 70/135 (51.85%), Query Frame = 0 
Query:   56 CKMKTESCPSEWNNLKLNSVVGCYKLFNDDTTWEKAEQRCKAENAHLASVASEDEQTMIYQFHSSTSYWIGFNDRENEGDWLWSDRLTSSYTNWADNAPNN---GGYSCASV--GKSGKWHDGKCNEKLNVVCKK 185
            C +  E C   WN  + +    CY+ F D  TW  AE+RC+ + +HL+S+ + +EQ  +   ++    WIG NDR  EGD+ WSD     + NW  N P+N    G  C  +   + G+W+D  CN  L   CKK
Sbjct: 2198 CNIDQEVCEEGWNKYQGH----CYRHFPDRETWVDAERRCREQQSHLSSIVTPEEQEFVNN-NAQDYQWIGLNDRTIEGDFRWSDGHPMQFENWRPNQPDNFFAAGEDCVVMIWHEKGEWNDVPCNYHLPFTCKK 2327
The following BLAST results are available for this feature:
BLAST of TCONS_00001201-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PGCA6.623e-1935.56Aggrecan core protein OS=Homo sapiens GN=ACAN PE=1... [more]
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