TCONS_00001283-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001283-protein
Unique NameTCONS_00001283-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001283-protein ID=TCONS_00001283-protein|Name=TCONS_00001283-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MDQEDKKVPTITKIGDKYFLWNEEDVLKLRKTHRICGVTVGSLPRKPWQN
NVLSLPVLLMSVEVSLCLSRNLACLKTIDRSRKRKVDVEQLNDFRSRQED
EQIRIFKKEKQMKSQMFYGHKKQKKAERKWQEMVDEDVARFRQQYKKDES
VTTEAVSGNTGVEDSVEHKQVIEITENDRKYYNHSIRVHIPTQMTDQQIL
SKCIFDFPSNKKDEVLCQVFTDLWEKGYYITSAEKFGGDFLVYPGDPMRY
HSKFIVSVVMDTNNQMTAQELVIYGRLGSAVKKTVVLASVAEQNTVQYVS
LSWKNL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000687XLOC_000687Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001283TCONS_00001283Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016690tRNA_splic_SEN34
IPR006677tRNA_intron_Endonuc_cat-like
Vocabulary: Cellular Component
TermDefinition
GO:0000214tRNA-intron endonuclease complex
Vocabulary: Biological Process
TermDefinition
GO:0000379tRNA-type intron splice site recognition and cleavage
GO:0006388tRNA splicing, via endonucleolytic cleavage and ligation
Vocabulary: Molecular Function
TermDefinition
GO:0000213tRNA-intron endonuclease activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation
biological_process GO:0000379 tRNA-type intron splice site recognition and cleavage
cellular_component GO:0000214 tRNA-intron endonuclease complex
molecular_function GO:0000213 tRNA-intron endonuclease activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016690tRNA-splicing endonuclease, SEN34 subunitPIRSFPIRSF017250tRNA_endo_SEN34coord: 1..306
e-value: 1.5E-60
score: 203.2
NoneNo IPR availableGENE3D3.40.1350.10coord: 214..306
e-value: 2.7E-27
score: 94.2
IPR006677tRNA intron endonuclease, catalytic domain-likePFAMPF01974tRNA_int_endocoord: 217..298
e-value: 1.6E-18
score: 66.4
IPR006677tRNA intron endonuclease, catalytic domain-likeSUPERFAMILY53032tRNA-intron endonuclease catalytic domain-likecoord: 216..303

Blast
[Close]
BLAST of TCONS_00001283-protein vs. Swiss-Prot (Human)
Match: SEN34 (tRNA-splicing endonuclease subunit Sen34 OS=Homo sapiens GN=TSEN34 PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.363e-36
Identity = 92/308 (29.87%), Postives = 148/308 (48.05%), Query Frame = 0 
Query:   17 KYFLWNEEDVLKLRKTHRICGVTVGSLPRKPWQNNVLSLPVLLMSVEVSLCLSRNLACLKTIDRSRKRKVDVEQLNDFRSRQED---EQIRIFKKEKQMKSQMFY-----GHKKQKKAERKWQEMVDEDVARFRQQYKKDESVTTEAVSGNTGVEDSVEHKQVIEITENDRKYYNHSIRVHIPT--------QMTDQQILSKCIFDFPSNKKD--EVLCQVFTDLWEKGYYITSAEKFGGDFLVYPGDPMRYHSKFIVSVVMDTNNQMTAQELVIYGRLGSAVKKTVVLASVAEQNTVQYVSLSWKNL 306
            +  +W  E V  LR+   + G TVG+LPR P QN+ L LP+LLM  E  L        L +  R   R   +  L  F+ +QE+   EQ  +  + ++ + Q        G   +K+   +         A   Q  K+DE+   +A SG    E++         +         ++ V + T        +  D ++ SK   D+P   +   E+   ++ DLWE+G+++++A KFGGDFLVYPGDP+R+H+ +I        + +  Q+LV  GRLG++V+KT++L S      V Y SL W +L
Sbjct:   10 RSLVWGAEAVQALRERLGVGGRTVGALPRGPRQNSRLGLPLLLMPEEARLLAEIGAVTLVSAPRPDSRHHSLA-LTSFKRQQEESFQEQSALAAEARETRRQELLEKITEGQAAKKQKLEQASGASSSQEAGSSQAAKEDETSDGQA-SGEQ--EEAGPSSSQAGPSNGVAPLPRSALLVQLATARPRPVKARPLDWRVQSK---DWPHAGRPAHELRYSIYRDLWERGFFLSAAGKFGGDFLVYPGDPLRFHAHYIAQ-CWAPEDTIPLQDLVAAGRLGTSVRKTLLLCSPQPDGKVVYTSLQWASL 309
The following BLAST results are available for this feature:
BLAST of TCONS_00001283-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SEN341.363e-3629.87tRNA-splicing endonuclease subunit Sen34 OS=Homo s... [more]
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