TCONS_00002059-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002059-protein
Unique Name	TCONS_00002059-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	471

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002059-protein ID=TCONS_00002059-protein|Name=TCONS_00002059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=471bp
MADRLRDELNDSKEEEEENFWKQILREVSAKSSRRFPSCKRILVLGNDGT
GKTSLVMKLRRSGDDLLRGSGLEYTYLDVDDEERDEHTRLSVWIQSGEAH
IKDLMKYVITKESIHHSLILLCIDISKPWNMLDQLENHVNILRQHLHTLN
ISAKILNELEKQVLRDFHMYKYNDEENKRLSSNMEQDEQEMNQLAENMIV
DNIGLPIVVAVTKTDNMSSLEQEHDYREEHFDFIQKNLRKFCLKCGASLI
YTSTKENCNTSVLYKYLLHRLYNFPLKDPAQIVEKDAIYIPAGWDNQSKI
NILDEHIKTFDANETFKDRIVKPVTRKYVNQEKEVVAEDEQKFLEAQMAI
LSKEPAPSSSAQRGPPSQDARASARMQGHSPGQRATGLPRPAAMPNMKGK
PDPTKGGAAGQNSSETVLANFFNSLLNKNSTGKPGGPPGKGAPPASGAAN
RSDVQAELEKMSRKTIKKEEK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001083	XLOC_001083	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002059	TCONS_00002059	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022780	Dynein_light_int_chain
IPR027417	P-loop_NTPase

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 177..197
None	No IPR available	GENE3D	3.40.50.300		coord: 21..286 e-value: 2.7E-17 score: 62.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 353..471
IPR022780	Dynein family light intermediate chain	PFAM	PF05783	DLIC	coord: 15..465 e-value: 2.4E-140 score: 468.4
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 204..271 coord: 33..148

Blast

[Close]

BLAST of TCONS_00002059-protein vs. Swiss-Prot (Human)
Match: DC1L2 (Cytoplasmic dynein 1 light intermediate chain 2 OS=Homo sapiens GN=DYNC1LI2 PE=1 SV=1)

HSP 1 Score: 355.525 bits (911), Expect = 2.626e-118
Identity = 194/464 (41.81%), Postives = 287/464 (61.85%), Query Frame = 0

Query:   12 SKEEEEENFWKQILREVSAKSSRRFPSCKRILVLGNDGTGKTSLVMKLRRSGDDLLRGSGLEYTYLDVDDEERDEHTRLSVWIQSGEAHIKDLMKYVITKESIHHSLILLCIDISKPWNMLDQLENHVNILRQHLHTLNISAKILNELEKQVLRDFHMYKYNDE-----ENKRLSSNMEQDEQEMN-QLAENMIVDNIGLPIVVAVTKTDNMSSLEQEHDYREEHFDFIQKNLRKFCLKCGASLIYTSTKENCNTSVLYKYLLHRLYNFPLKDPAQIVEKDAIYIPAGWDNQSKINILDEHIKTFDANETFKDRIVKPVTRKYVNQEKEVVAEDEQKFLEAQMAILSKEPAPSSSAQRGPPSQDARASARMQGHSPGQRATGLPRPAAMPNMK-GKPDP-TKGGAAGQNSSETVLANFFNSLLNKNSTGKPGGPPGKGAPPASGAANR---SDVQAELEKMSRK 464
            S+EEE ++ W  IL EVS ++  + PS K ILV G DG+GKT+L+ KL+   +   +G GLEY YL V DE+RD+HTR +VWI  G+ + K L+K+ ++ ES+  +L++   D+S+PW +++ L+   ++LR+H+  + I  + + ELE++ ++DF  Y   +E       +R       DE+ +   L +N++  N+G+P++V  TK D +S LE+EHDYR+EH DFIQ +LR+FCL+ GA+LIYTS KE  N  +LYKY++H+ Y F    PA +VEKDA++IPAGWDN+ KI IL E+  T    + ++D IVKP  RK V+ +KE+ AEDEQ FL  Q ++L+K+PA  + A    P++    S R QG     R      P++ P     KPDP  K  AA    SE VLA+FFNSLL+K +        G     A  +  +   S+VQ EL++M+RK
Sbjct:   27 SEEEEGQSLWSSILSEVSTRARSKLPSGKNILVFGEDGSGKTTLMTKLQ-GAEHGKKGRGLEYLYLSVHDEDRDDHTRCNVWILDGDLYHKGLLKFAVSAESLPETLVIFVADMSRPWTVMESLQKWASVLREHIDKMKIPPEKMRELERKFVKDFQDYMEPEEGCQGSPQRRGPLTSGSDEENVALPLGDNVLTHNLGIPVLVVCTKCDAVSVLEKEHDYRDEHLDFIQSHLRRFCLQYGAALIYTSVKEEKNLDLLYKYIVHKTYGFHFTTPALVVEKDAVFIPAGWDNEKKIAILHENFTTVKPEDAYEDFIVKPPVRKLVH-DKELAAEDEQVFLMKQQSLLAKQPATPTRASES-PARGPSGSPRTQG-----RGGPASVPSSSPGTSVKKPDPNIKNNAA----SEGVLASFFNSLLSKKTGSPGSPGAGGVQSTAKKSGQKTVLSNVQEELDRMTRK 478

The following BLAST results are available for this feature:

BLAST of TCONS_00002059-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002059-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DC1L2	2.626e-118	41.81	Cytoplasmic dynein 1 light intermediate chain 2 OS...	[more]

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TCONS_00002059-protein (polypeptide) - C. hemisphaerica