TCONS_00002101-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002101-protein
Unique NameTCONS_00002101-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length226

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002101-protein ID=TCONS_00002101-protein|Name=TCONS_00002101-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
LKSFTGVDNIRFLSMICLTLSEMEDGISVLVPAGRSDCYFRELKVGDRMD
LEIQVLSGGHIDIHILVLSPTGRIILDEQSVTETSTEIKIDENGAYKVCL
DNTFSLRSDKVVYFDLGIDEHNGTTVDHAELFQQMQLEKDEIDNTKDIAK
SLDKIEMIFETIQEMQTRFRARYARHHYLQNANMTLVQWFSGASCFLMIM
VGGLQVFLIRNLFKEQNAQRGMKAGL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001099XLOC_001099Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002101TCONS_00002101Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009038GOLD_dom
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009038GOLD domainSMARTSM01190EMP24_GP25L_2coord: 26..214
e-value: 1.7E-40
score: 150.5
IPR009038GOLD domainPFAMPF01105EMP24_GP25Lcoord: 28..214
e-value: 4.5E-31
score: 108.1
IPR009038GOLD domainPROSITEPS50866GOLDcoord: 36..118
score: 17.19
IPR009038GOLD domainSUPERFAMILY101576Supernatant protein factor (SPF), C-terminal domaincoord: 36..122
NoneNo IPR availableGENE3D2.60.120.680coord: 27..118
e-value: 0.0013
score: 18.3

Blast
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BLAST of TCONS_00002101-protein vs. Swiss-Prot (Human)
Match: TMED5 (Transmembrane emp24 domain-containing protein 5 OS=Homo sapiens GN=TMED5 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.387e-22
Identity = 56/199 (28.14%), Postives = 112/199 (56.28%), Query Frame = 0 
Query:   23 MEDGISVLVPAGRSDCYFRELKVGDRMDLEIQVLSGGHIDIHILVLSPTGRIILDEQSVTETSTEIKIDENGAYKVCLDNTFSLRSDKVVYFDLGIDEHNGTTVDHAELFQQMQLEKDEID-NTKDIAKSLDKIEMIFETIQEMQTRFRARYARHHYLQNANMTLVQWFSGASCFLMIMVGGLQVFLIRNLFKEQNAQR 220
            ++   +  +PAG+ +C+++ + +   +++E QVL G  +DI   + SP G+ ++ EQ  ++    ++  E G Y  C DNTFS  S+KV++F+L +D + G      E +++     D +D   +DI +S++ I+        +QT  RA  AR   +Q +N   V ++S  +  +M++V  +QV+++++LF+++   R
Sbjct:   32 LDSDFTFTLPAGQKECFYQPMPLKASLEIEYQVLDGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVET-EVGDYMFCFDNTFSTISEKVIFFELILD-NMGEQAQEQEDWKKYITGTDILDMKLEDILESINSIKSRLSKSGHIQTLLRAFEARDRNIQESNFDRVNFWSMVNLVVMVVVSAIQVYMLKSLFEDKRKSR 228
The following BLAST results are available for this feature:
BLAST of TCONS_00002101-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMED51.387e-2228.14Transmembrane emp24 domain-containing protein 5 OS... [more]
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