TCONS_00002452-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002452-protein
Unique NameTCONS_00002452-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length139

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002452-protein ID=TCONS_00002452-protein|Name=TCONS_00002452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
MDLMHFVKTRTASLLTELDKKLLVVLRDGRTLIGELMSVDQFANLVLKDT
IERIHVGQEYGDIERGVFIVRGENVVLLGEVDTEKEESSTLRKVSMEDIL
EAQRKDLLEKEEVERKKNILRHERGLPPHMPDMGLDDFA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001310XLOC_001310Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002452TCONS_00002452Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR034104Lsm1
IPR010920LSM_dom
Vocabulary: Biological Process
TermDefinition
GO:0000956nuclear-transcribed mRNA catabolic process
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000956 nuclear-transcribed mRNA catabolic process
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 12..80
e-value: 7.6E-17
score: 72.0
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 18..79
e-value: 2.7E-16
score: 58.9
NoneNo IPR availableGENE3D2.30.30.100coord: 10..122
e-value: 5.3E-25
score: 87.0
IPR034104Sm-like protein Lsm1CDDcd01728LSm1coord: 11..81
e-value: 6.18827E-37
score: 121.854
IPR010920LSM domainSUPERFAMILY50182Sm-like ribonucleoproteinscoord: 14..88

Blast
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BLAST of TCONS_00002452-protein vs. Swiss-Prot (Human)
Match: LSM1 (U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.663e-43
Identity = 76/128 (59.38%), Postives = 97/128 (75.78%), Query Frame = 0 
Query:   11 TASLLTELDKKLLVVLRDGRTLIGELMSVDQFANLVLKDTIERIHVGQEYGDIERGVFIVRGENVVLLGEVDTEKEESSTLRKVSMEDILEAQRKDLLEKEEVERKKNILRHERGLPPHMPDMGLDDF 138
            TASL+ ++DKK LV+LRDGRTLIG L S+DQFANLVL  T+ERIHVG++YGDI RG+F+VRGENVVLLGE+D EKE  + L++VS+E+ILE QR +   K E E+ K     +RGL     D  LD++
Sbjct:    7 TASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGEIDLEKESDTPLQQVSIEEILEEQRVEQQTKLEAEKLKVQALKDRGLSIPRADT-LDEY 133
The following BLAST results are available for this feature:
BLAST of TCONS_00002452-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LSM12.663e-4359.38U6 snRNA-associated Sm-like protein LSm1 OS=Homo s... [more]
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