TCONS_00002505-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002505-protein
Unique Name	TCONS_00002505-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	290

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002505-protein ID=TCONS_00002505-protein|Name=TCONS_00002505-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
TYRKSFNNVEETSEEYEKKMQLEEQLRAAMDKLKYKKRQMKELQEDLRVM
QATAESLTVDENELVVTMEEKQRTIDSLQKELDVQEEKKERADKMTRKVI
RDVKGSSTASKKSKKGFEEGEADIKVRELRDFNNSLMKKLGLICRDYPDI
APVLTMYCQQSGLPVPPSPGPGSSRGSSTTGSVRSNLSSARSSVSSVRSD
TSSARQSRQALGTVSVDLSLNAFASHSPLGTPPRSTASSRASSGKSTPSR
TPSRSTSASSNRTSPTKKTPTSKSNSRPPTGQSSASSSKR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001341	XLOC_001341	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002505	TCONS_00002505	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 6..95
None	No IPR available	GENE3D	3.40.50.300		coord: 1..214 e-value: 5.0E-4 score: 18.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 224..290
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..208

Blast

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BLAST of TCONS_00002505-protein vs. Swiss-Prot (Human)
Match: CCD39 (Coiled-coil domain-containing protein 39 OS=Homo sapiens GN=CCDC39 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.031e-20
Identity = 62/176 (35.23%), Postives = 101/176 (57.39%), Query Frame = 0

Query:    2 YRKSFNNVEETSEEYEKKMQLEEQLRAAMDKLKYKKRQMKELQEDLRVMQATAESLTVDENELVVTMEEKQRTIDSLQKELDVQEEKKERADKMTRKVIRDVKGSSTASKKSKKGFEEGEADIKVRELRDFNNSLMKKLGLICRDYPDIAPVLTMYCQQSGLPVPPSPGPGSSRGS 177
            Y++SF  V  +S+EYE K+QLEEQ RA  +K +YK+RQ++ELQED++ M+ T + +    N +   + EKQ     L KE + Q+ K ER  K   K+ ++++       ++ +     E DIK+RE++ F+  + + L  I  +  +I  +L  Y QQSGL +P +   GS + S
Sbjct:  709 YKQSFKKVTPSSDEYELKIQLEEQKRAVDEKYRYKQRQIRELQEDIQSMENTLDVIEHLANNVKEKLSEKQAYSFQLSKETEEQKPKLERVTKQCAKLTKEIRLLKDTKDETME-----EQDIKLREMKQFHKVIDEMLVDIIEENTEIRIILQTYFQQSGLELPTASTKGSRQSS 879

The following BLAST results are available for this feature:

BLAST of TCONS_00002505-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002505-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CCD39	1.031e-20	35.23	Coiled-coil domain-containing protein 39 OS=Homo s...	[more]

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TCONS_00002505-protein (polypeptide) - C. hemisphaerica