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Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00002610-protein ID=TCONS_00002610-protein|Name=TCONS_00002610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1451bp
MASYGHRNKPALYKPTDFLSQQKKNQMRGSNQKEKTPSEEGTSESAGKEQ
TDGSVKKVTILKPPQTKPPKSEEQKSSDPAKEKETKKDTAPQKLGTEDKK
QASSRDPPQAQDKKPVTKDQKKKPEKVDQEASKEQEASKEQEAPVGVSTK
DFDRIQKLREFMEKQQISDSKGAQDREGKQGGKKDQTGKDSKSSQNRNQR
GGRSNSKGKSWNDDHRNDRRSNSSNNKRPQSSGKQQHGESKSKDQTGAEK
DKKPDSAGGANIKQGGNKGDDAQPSKQQQRNQDSSKKNYNKNYNNQNQRG
PNNAQGILGNPYPSHPMPNLPHQGKQQTYAGPTAVTAGKSSKPHITVQAS
KDKNEHKRSLDFVKNFFNTDPEVQYNRKKNAEKAATSSSAPASTTSNTPS
TSKGYITPATVSPSIPNPNPYMTAAELTSYMNAHQQHTGHSSQNHNAKFL
QQGMQMPLSMPSNFSNLTNFYHQSSMTPHSQISQSASNTTYSHGAAASLQ
QHQQLQQQQQHHRNHPNSFHSVSHSAFQQQQQQQQHQQQRNFDMYSSINQ
NALQQQQQQQQQHHSQQTGVPGQHFQGRSPATTHANSAVGNSYNVLNSYS
NYFPSGSSHNGSHVFHVQQEIDQSAINEILDDPKKPKKWQQKALNKCGKV
DSQQARSLVKELIDGTYECMVCCESVKFNNAVWSCGSCFHIFHLHCIRKW
AKSEAASVKGQNGWRCPGCQNISTRPPNKYYCFCGKVRDPDWTPRDGITP
HSCGEVCKKKRTCDHNCNELCHPGPCPSCPVMVTKYCYCGKKSTKVRCGN
TKPITCDDQCFKLLECGKHHCDKQCHGGPCNKCEIKLPQECFCGNQKKII
ICGSGEEISVETEVEEPYQKVFSCLEPCGKVLACGNHLCEDPCHLGECQE
CPLLPENVKYCPCKKVDIGELLGDENRMSCLDPVPTCDSFCGKKLLCGNK
GISHLCMLKCHEGPCKPCDKKIEVSCRCKATKKQMHCKDLKPGEELLCER
KCTKKRRCGRHKCNQKCCVDKDHNCNIICGKKLSCGQHKCDEVCHAGFCP
SCWRASFDELSCHCGATVQYPPIPCGAKPPECDQPCSRPHPCGHAALHPC
HSDDKCAPCAVLMTKTCMGGHKLWKNVPCHQQDVSCGQKCGKPSNCEMHK
CKKVCHKGECLTENEVCMQKCTNIRPDCGHPCNAECHKGICPDTTCKVQV
TIHCRCRRKSAQALCMAGNLQSAYQSFNTEILTMQLQNLQSGQSIDISKL
TNPEKRPKFLDCDEECSRLERNKRFVEALGIEGAESRQFQQCTIYSDSLK
QEARLRLPFIKQLETIFENLYDVINKTGQQQVAHNFQPMNVAQRKIIHEL
AECYGFKTYSVDQEPKRSTVVVAYKESYMPQIKLADVVEHEVKNLIPSSL
NGRGAAAAVADTQTQQYGDKNTLKSILRQQPSGGEGDAGKRVNYFDDDYQ
H Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| cellular_component |
GO:0005634 |
nucleus |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR001374 | R3H domain | SMART | SM00393 | R3H_4 | coord: 1296..1374
e-value: 1.9E-5
score: 34.1 |
| IPR001374 | R3H domain | PFAM | PF01424 | R3H | coord: 1324..1372
e-value: 3.5E-15
score: 55.6 |
| IPR001374 | R3H domain | GENE3D | 3.30.1370.50 | | coord: 1309..1416
e-value: 4.3E-13
score: 48.5 |
| IPR001374 | R3H domain | PROSITE | PS51061 | R3H | coord: 1310..1375
score: 15.342 |
| IPR001374 | R3H domain | SUPERFAMILY | 82708 | R3H domain | coord: 1296..1393 |
| IPR000967 | Zinc finger, NF-X1-type | SMART | SM00438 | znfxneu3 | coord: 1008..1027
e-value: 11.0
score: 12.7
coord: 884..903
e-value: 0.0034
score: 26.6
coord: 1178..1198
e-value: 0.082
score: 22.0
coord: 947..970
e-value: 0.97
score: 18.5
coord: 1035..1054
e-value: 1.5E-4
score: 31.1
coord: 763..781
e-value: 0.0011
score: 28.2
coord: 1092..1111
e-value: 10.0
score: 13.0
coord: 1146..1169
e-value: 0.0058
score: 25.8
coord: 816..835
e-value: 0.18
score: 20.9 |
| IPR000967 | Zinc finger, NF-X1-type | PFAM | PF01422 | zf-NF-X1 | coord: 947..968
e-value: 0.016
score: 15.1
coord: 884..902
e-value: 5.8E-4
score: 19.8
coord: 1035..1053
e-value: 1.1E-5
score: 25.3
coord: 764..780
e-value: 0.041
score: 13.8
coord: 1008..1018
e-value: 2.8
score: 8.0
coord: 816..833
e-value: 2.8
score: 8.0
coord: 1140..1167
e-value: 0.27
score: 11.2
coord: 1178..1197
e-value: 0.63
score: 10.1 |
| IPR011989 | Armadillo-like helical | GENE3D | 1.25.10.10 | | coord: 432..803
e-value: 4.3E-5
score: 21.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1427..1451 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 475..588 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..356 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 379..418 |
| None | No IPR available | CDD | cd06008 | NF-X1-zinc-finger | coord: 806..854
e-value: 3.43102E-9
score: 53.8884 |
| None | No IPR available | CDD | cd06008 | NF-X1-zinc-finger | coord: 937..989
e-value: 2.09332E-9
score: 54.6588 |
| None | No IPR available | CDD | cd06008 | NF-X1-zinc-finger | coord: 1136..1182
e-value: 3.17941E-6
score: 45.414 |
| None | No IPR available | CDD | cd06008 | NF-X1-zinc-finger | coord: 874..916
e-value: 3.33462E-9
score: 53.8884 |
| None | No IPR available | CDD | cd06008 | NF-X1-zinc-finger | coord: 753..799
e-value: 2.04169E-11
score: 60.4368 |
| None | No IPR available | CDD | cd06008 | NF-X1-zinc-finger | coord: 1025..1077
e-value: 1.18327E-9
score: 55.4292 |
| None | No IPR available | SUPERFAMILY | 57850 | RING/U-box | coord: 649..726 |
| IPR019786 | Zinc finger, PHD-type, conserved site | PROSITE | PS01359 | ZF_PHD_1 | coord: 669..719 |
| IPR019787 | Zinc finger, PHD-finger | PROSITE | PS50016 | ZF_PHD_2 | coord: 666..722
score: 9.036 |
| IPR001841 | Zinc finger, RING-type | PROSITE | PS50089 | ZF_RING_2 | coord: 669..720
score: 10.542 |
Blast
BLAST of TCONS_00002610-protein vs. Swiss-Prot (Human)
Match: NFX1 (Transcriptional repressor NF-X1 OS=Homo sapiens GN=NFX1 PE=1 SV=2) HSP 1 Score: 694.886 bits (1792), Expect = 0.000e+0 Identity = 366/797 (45.92%), Postives = 491/797 (61.61%), Query Frame = 0
Query: 608 SHNGSHVFHVQQEIDQSAINEILDDPKKPKKWQQKALNKCGKVDSQQARSLVKELIDGTYECMVCCESVKFNNAVWSCGSCFHIFHLHCIRKWAKSEAASVKGQNGWRCPGCQNISTRPPNKYYCFCGKVRDPDWTPRDGITPHSCGEVCKKKR---TCDHNCNELCHPGPCPSCPVMVTKYCYCGKKSTKVRCGNTKPITCDDQCFKLLECGKHHCDKQCHGGPCNKCEIKLPQECFCGNQKKIIICGSGEEISVETEVEEPYQKVFSCLEPCGKVLACGNHLCEDPCHLGECQECPLLPENVKYCPCKKVDIGELL--GDENRMSCLDPVPTCDSFCGKKLLCGNKGISHLCMLKCHEGPCKPCDKKIEVSCRCKATKKQMHCKDLKPGEE-LLCERKCTKKRRCGRHKCNQKCCVDKDHNCNIICGKKLSCGQHKCDEVCHAGFCPSCWRASFDELSCHCGATVQYPPIPCGAKPPECDQPCSRPHPCGHAALHPCHSDDKCAPCAVLMTKTCMGGHKLWKNVPCHQQDVSCGQKCGKPSNCEMHKCKKVCHKGECLTENEVCMQKCTNIRPDCGHPCNAECHKGI-CPDTTCKVQVTIHCRCRRKSAQALCMAGNLQSAYQSFNTEILTMQLQNLQSGQSIDISKL-TNPEKRPKFLDCDEECSRLERNKRFVEALGI-EGAESRQFQQC-TIYSDSLKQEARLRLPFIKQLETIFENLYDVINKTGQQQVAHNFQPMNVAQRKIIHELAECYGFKTYSVDQEPKRSTVVVAYK-ESYMPQIKLADVVEHEVK 1393
S N + + + +DQ DP+ + + N K SL+++L YECMVCCE V+ VWSC SC+H+FHL+CI+KWA+S A+ GQ+GWRCP CQN+S PN Y CFCGKV++P+W+ R+ I PHSCGEVC+KK+ C H+CN LCHPGPCP CP +TK C CG+ VRCG + C + C +L CG+H C + CHGG C C+I L Q C+CG+ + ++CG+ ++ + FSCL+ CGK L CGNH C CH CQ+CP LP+ V+ CPC + + +LL G +R +C+DPVP+C CGK L CG+ H C CHEG C PC + +SCRC K++ C LK + +C+++C KKR CGRHKCN+ CCVDK+H C +ICG+KL CG H+C+E CH G C +CW+ASFDEL+CHCGA+V YPP+PCG +PPEC Q C+R H C H H CHS++KC PC L K CMG H+ N+PCH D+SCG C C MHKC+++CHKGECL +E C Q CT R DCGHPC A CH CP T CK +V + C C R+ +C + S YQ + ++ ++Q G S++ISKL T E L+CDEECS LER KR EA I E ++ + + +SDSLK++AR L F+ +E E L + +NK + +H+F PMN R+IIH+LA+ YG ++ S D EPKR+ VV A + +S P L V+E E++
Sbjct: 297 SENLAVINKSSRRVDQEKCTVRRQDPQVVSPFSRGKQNHVLKNVETHTGSLIEQLTTEKYECMVCCELVRVTAPVWSCQSCYHVFHLNCIKKWARSPASQADGQSGWRCPACQNVSAHVPNTYTCFCGKVKNPEWS-RNEI-PHSCGEVCRKKQPGQDCPHSCNLLCHPGPCPPCPAFMTKTCECGRTRHTVRCGQAVSVHCSNPCENILNCGQHQCAELCHGGQCQPCQIILNQVCYCGSTSRDVLCGT--DVGKSDGFGD-----FSCLKICGKDLKCGNHTCSQVCHPQPCQQCPRLPQLVRCCPCGQTPLSQLLELGSSSRKTCMDPVPSCGKVCGKPLPCGSLDFIHTCEKLCHEGDCGPCSRTSVISCRCSFRTKELPCTSLKSEDATFMCDKRCNKKRLCGRHKCNEICCVDKEHKCPLICGRKLRCGLHRCEEPCHRGNCQTCWQASFDELTCHCGASVIYPPVPCGTRPPECTQTCARVHECDHPVYHSCHSEEKCPPCTFLTQKWCMGKHEFRSNIPCHLVDISCGLPCSATLPCGMHKCQRLCHKGECLV-DEPCKQPCTTPRADCGHPCMAPCHTSSPCPVTACKAKVELQCECGRRKEMVICSEAS--STYQRIAAISMASKITDMQLGGSVEISKLITKKEVHQARLECDEECSALERKKRLAEAFHISEDSDPFNIRSSGSKFSDSLKEDARKDLKFVSDVEKEMETLVEAVNKGKNSKKSHSFPPMNRDHRRIIHDLAQVYGLESVSYDSEPKRNVVVTAIRGKSVCPPTTLTGVLEREMQ 1081
The following BLAST results are available for this feature:
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