TCONS_00002631-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002631-protein
Unique Name	TCONS_00002631-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	390

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002631-protein ID=TCONS_00002631-protein|Name=TCONS_00002631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MDKYWKTCLLLCLLSPVNLCGPGRSPSHSRFKRLRKGDHFPEYLHSEVDV
YDKNIPPKHCSELVQIITTDIIFKDYRFESDARKTTKICRKALLKLSNIV
KSYWKGTLKLLVIQGYMSSPEKEVENDKLHMLGRAFNLELKLSKNPSKHH
KVADHVISRLGELAYRNTQFQYVRFDEGGYLHVSCPCEVDKVESRCFPSN
SEVNLQNGSRALIKDIRPGDSVLTMNQNGELKFDEVVMLMHQNKGTLIQN
YVQITTDNDKSITISRHHLIFVSKTQTKYAKDVLTGDLLFTYDSLTKKAA
KSIVTHIEHDVTQKGMHAPLTKSGTLIVNDVYASCYAMFPSHRVSHAVFW
LWRQVYDFLKYFDFSIGIPSDEIHWYPDVFRKTLVYFNVL

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001422	XLOC_001422	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002631	TCONS_00002631	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001657	Hedgehog
IPR003587	Hint_dom_N
IPR009045	Hedgehog_sig/DD-Pept_Zn-bd_dom
IPR001767	Hint_dom
IPR000320	Hedgehog_signalling_dom
IPR006141	Intein_N
IPR028992	Hedgehog/Intein_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0007275	multicellular organism development
GO:0007267	cell-cell signaling
GO:0006508	proteolysis
GO:0016539	intein-mediated protein splicing

Vocabulary: **Molecular Function**
Term	Definition
GO:0008233	peptidase activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0016539	intein-mediated protein splicing
biological_process	GO:0007275	multicellular organism development
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001657	Hedgehog protein	PRINTS	PR00632	SONICHHOG	coord: 331..354 score: 39.58 coord: 315..329 score: 53.03 coord: 264..274 score: 34.71 coord: 372..388 score: 22.73
IPR003587	Hint domain N-terminal	SMART	SM00306	hint_7	coord: 194..293 e-value: 1.5E-13 score: 61.0
IPR009045	Hedgehog signalling/DD-peptidase zinc-binding domain	GENE3D	3.30.1380.10		coord: 31..191 e-value: 6.1E-19 score: 67.7
IPR009045	Hedgehog signalling/DD-peptidase zinc-binding domain	SUPERFAMILY	55166	Hedgehog/DD-peptidase	coord: 57..185
IPR001767	Hedgehog protein, Hint domain	PFAM	PF01079	Hint	coord: 194..380 e-value: 5.5E-46 score: 156.7
None	No IPR available	GENE3D	2.170.16.10		coord: 196..337 e-value: 3.4E-23 score: 81.5
None	No IPR available	CDD	cd00081	Hint	coord: 196..335 e-value: 1.32633E-17 score: 77.3093
IPR000320	Hedgehog, N-terminal signalling domain	PFAM	PF01085	HH_signal	coord: 60..184 e-value: 2.2E-11 score: 43.6
IPR006141	Intein N-terminal splicing region	PROSITE	PS50817	INTEIN_N_TER	coord: 196..272 score: 9.56
IPR028992	Hedgehog/Intein (Hint) domain	SUPERFAMILY	51294	Hedgehog/intein (Hint) domain	coord: 196..337

Blast

[Close]

BLAST of TCONS_00002631-protein vs. Swiss-Prot (Human)
Match: IHH (Indian hedgehog protein OS=Homo sapiens GN=IHH PE=1 SV=4)

HSP 1 Score: 130.568 bits (327), Expect = 4.077e-34
Identity = 106/383 (27.68%), Postives = 168/383 (43.86%), Query Frame = 0

Query:   20 CGPGRSPSHSRFKRLRK---------GDHFPEYLHSEVDVYDKNIP--PKHCSELVQIITTDIIFKDYRFESDARKTTKICRKALLKLSNIVKSYWKGTLKLLVIQGYMSSPEKEVENDKLHMLGRAFNLELKLSKNPSKHHKVADHVISRLGELAYRNTQ--FQYVRFDEGGYLHVSCPCEVDKVE--SRCFPSNSEVNLQNGSRALIKDIRPGDSVLTMNQNGELKFDEVVMLMHQNKGTLIQNYVQITTDNDKSITISRHHLIFVSKTQTK--------YAKDVLTGD--LLFTYDSLTKKAAKSIVTHIEHDVTQKGMHAPLTKSGTLIVNDVYASCYAMFPSHRVSHAVFWLWRQVYDFLKYFDFSIGIPSDEIHWYP 377
            CGPGR    SR +  RK           + PE        Y+  I    +   EL      DIIFKD       R  T+ C+  L  L+  V + W G +KL V +G+        E+  LH  GRA ++              +D   ++ G LA    +  F +V ++   ++H S   E         CFP+ ++V L++G+R  +  +RPGD VL M ++G   F +V++ + +    L    V  T D  + + ++  HL+F +   T+        +A  V  G   L+     L      ++ TH+       G +APLTK GTL+V DV ASC+A    H ++   FW  R ++  L +  ++   P + +HWYP
Sbjct:   28 CGPGRVVG-SRRRPPRKLVPLAYKQFSPNVPEKTLGASGRYEGKIARSSERFKELTPNYNPDIIFKDEENTGADRLMTQRCKDRLNSLAISVMNQWPG-VKLRVTEGWDEDGHHSEES--LHYEGRAVDI------------TTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAAAKTGGCFPAGAQVRLESGARVALSAVRPGDRVLAMGEDGSPTFSDVLIFLDREPHRLRAFQVIETQDPPRRLALTPAHLLFTADNHTEPAARFRATFASHVQPGQYVLVAGVPGLQPARVAAVSTHV-----ALGAYAPLTKHGTLVVEDVVASCFAAVADHHLAQLAFWPLR-LFHSLAWGSWT---PGEGVHWYP 385

The following BLAST results are available for this feature:

BLAST of TCONS_00002631-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002631-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
IHH	4.077e-34	27.68	Indian hedgehog protein OS=Homo sapiens GN=IHH PE=...	[more]

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TCONS_00002631-protein (polypeptide) - C. hemisphaerica