TCONS_00002645-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002645-protein
Unique NameTCONS_00002645-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002645-protein ID=TCONS_00002645-protein|Name=TCONS_00002645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=601bp
MTGVTSEQDQDDPHQQIYRIVKGTMMLKAGRMGRPHFRQFRVSKDLKYLQ
WDSPNKEKIETRIDISEIKEIIKGQKTKVFEGNPIPEYEAISFSIMYSFG
NQERSLDIVCKDRAEYDVWTAGLEALRNGFNDLDAVSSKLSDIEDGSSKL
SLEFGIISDRVSVKEDACDIYTWGASTKGTLGHGEAEEELVPRVVEALLG
RDIRKIACGFEHTLAVSVTGEVFSMGSGRGGKLGDNIHDRYMPLKVGSLS
EKKVVALSCSELHSAVVTSTGELYSFGRTGPRLGYSIEGRKQEIPKQVDA
LKKHFIVKVSCGLKYTLALTKEGQVFAFGENGFGQLGLGHRDECKTPTKI
KAFDGLRITQISAGMEHAGAVTENGDVWLWGNNDFGQLGTGDTESRDSPH
EAPSTFWNEEIQDIKCGGKHTVVLSCTGKIYCFGDGQYGQLGVNLRPTQT
NLSTPCNVPIPSKVVQVDCGIAHTAAVTDNGTLYTWGKGSGARLGHSDHR
DRTTPTLVESLAYKNVQSIACGAHHTAASVIRAWVHDQEAKSCMACKLRF
TTVRRKHHCRKCGGVFCNGCTSKKFPILEIGYTDPVRVCDRCYNILSDQN
S
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001431XLOC_001431Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002645TCONS_00002645Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000408Reg_chr_condens
IPR000306Znf_FYVE
IPR011993PH_dom-like
IPR013083Znf_RING/FYVE/PHD
IPR001849PH_domain
IPR017455Znf_FYVE-rel
IPR009091RCC1/BLIP-II
IPR011011Znf_FYVE_PHD
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000408Regulator of chromosome condensation, RCC1PRINTSPR00633RCCNDNSATIONcoord: 169..185
score: 39.22
coord: 222..238
score: 30.39
coord: 476..497
score: 40.15
coord: 203..216
score: 30.95
coord: 325..339
score: 37.78
coord: 309..325
score: 30.39
coord: 417..435
score: 37.72
IPR000408Regulator of chromosome condensation, RCC1PFAMPF00415RCC1coord: 322..370
e-value: 1.0E-13
score: 51.5
coord: 374..424
e-value: 1.7E-12
score: 47.6
coord: 170..216
e-value: 1.4E-11
score: 44.7
coord: 428..477
e-value: 2.7E-10
score: 40.6
coord: 480..528
e-value: 2.2E-12
score: 47.3
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS00626RCC1_2coord: 206..216
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 323..374
score: 15.127
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 271..322
score: 11.188
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 375..427
score: 14.705
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 220..270
score: 12.293
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 481..532
score: 15.006
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 428..480
score: 13.941
IPR000408Regulator of chromosome condensation, RCC1PROSITEPS50012RCC1_3coord: 168..219
score: 14.685
IPR000306FYVE zinc fingerSMARTSM00064fyve_4coord: 529..598
e-value: 2.4E-24
score: 96.9
IPR000306FYVE zinc fingerPFAMPF01363FYVEcoord: 533..597
e-value: 1.0E-19
score: 70.3
IPR011993PH domain-likeGENE3D2.30.29.30coord: 23..129
e-value: 7.9E-23
score: 80.3
IPR011993PH domain-likeSUPERFAMILY50729PH domain-likecoord: 13..126
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 535..601
e-value: 4.9E-23
score: 80.3
IPR001849Pleckstrin homology domainPFAMPF16457PH_12coord: 15..128
e-value: 3.5E-10
score: 40.4
NoneNo IPR availableGENE3D2.130.10.30coord: 283..534
e-value: 1.3E-80
score: 270.9
NoneNo IPR availableGENE3D2.130.10.30coord: 158..282
e-value: 6.0E-33
score: 113.6
NoneNo IPR availableCDDcd13365PH_PLC_plant-likecoord: 22..128
e-value: 1.37947E-40
score: 142.423
IPR017455Zinc finger, FYVE-relatedPROSITEPS50178ZF_FYVEcoord: 537..597
score: 13.125
IPR009091Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein IISUPERFAMILY50985RCC1/BLIP-IIcoord: 167..530
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 533..598

Blast
BLAST of TCONS_00002645-protein vs. Swiss-Prot (Human)
Match: HERC4 (Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 2.117e-50
Identity = 118/348 (33.91%), Postives = 190/348 (54.60%), Query Frame = 0
Query:  173 WGASTKGTLGHGEAEEELV--PRVVEALLGRDIRKIACGFEHTLAVSVTGEVFSMGSGRGGKLGDNIHDRYMPLKVGSLSEKKVVALSCSELHSAVVTSTGELYSFGR-TGPRLGYSIEGRKQEIPKQVDALKKHFIVKVSCGLKYTLALTKEGQVFAFGENGFGQLGLGHRDECK---TPTKIKAFDGLRITQISAGMEHAGAVTENGDVWLWGNNDFGQLGTGDTESRDSPHEAPSTFWNEEIQDIKCGGKHTVVLSCTGKIYCFGDGQYGQLGVNLRPTQTNLSTPCNVPIPSKVVQVDCGIAHTAA-VTDNGTLYTWGKGSGARLGHSDHRDRTTPTLVESLAY 513
            WG ++ G LG G  +EE+V  PR  +  + + +R + CG  HT+ V   G V++ G    G+LG     R  P +V +L  + +VA+SC E H+  +   G++Y++G  +  +LG         +P+ + +L    IV+V+CG  ++LAL+K  +VF +G+N +GQLGLG   +CK   +P  +K+  G+   Q++AG  H+  +T +G ++ WG N FGQLG  D   R  P+   S   +++I  I CG  HT  L+  G ++ FG G YGQLG N    + N      + + S V ++ CG  HT+A V  +G +Y++G G   +LG     +R +P  V+   Y
Sbjct:    4 WGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQLGHE-KSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLG--TDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKS-LRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFEL-MGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSPFTVKGNWY 346          

HSP 2 Score: 157.918 bits (398), Expect = 2.102e-40
Identity = 104/292 (35.62%), Postives = 154/292 (52.74%), Query Frame = 0
Query:  243 PLKVGSLSEKKVVALSCSELHSAVVTSTGELYSFGRTGPRLGYSIEGRKQEIPKQVDALKKHFIVKVSCGLKYTLALTKEGQVFAFGENGFGQLGLGHRDEC-KTPTKIKAFDGLRITQISAGMEHAGAVTENGDVWLWGNNDFGQLGTG-DTESRDSPHEAPSTFWNEEIQDIKCGGKHTVVLSCTGKIYCFGDGQYGQLGVNLRPTQ--TNLSTPCNVPIPSKVVQVDCGIAHTAAVTDNGTLYTWGKGSGARLGHSDHRDRTTPTLVESLAYKNVQSIACGAHHTAASV 530
            P K      K+V  + C   H+  V   G +Y+ G     LG     + ++ P+QV AL    IV VSCG  +TLAL  +GQV+A+G +  GQLGL   +EC + P  IK+   ++I Q++ G  H+ A+++  +V+ WG N +GQLG G D + + SP    S      +Q +  GG H+ VL+ +G I+ +G  ++GQLG+N    +   NL          K+V + CG  HTAA+T  G ++T+G G   +LGH+       P  V  L    V  IACG  HT+A V
Sbjct:   25 PRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCND--LGQLGHEKSRKKPEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQ-VAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLR---SQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTEIACGRQHTSAFV 310          

HSP 3 Score: 137.887 bits (346), Expect = 7.267e-34
Identity = 89/293 (30.38%), Postives = 154/293 (52.56%), Query Frame = 0
Query:  170 IYTWGASTKGTLGHGEAEEELVPRVVEALLGRDIRKIACGFEHTLAVSVTGEVFSMGSGRGGKLGDNIHDR--YMPLKVGSLSEKKVVALSCSELHSAVVTSTGELYSFGRTGP-RLGYSIEGRKQEIPKQVDALKKHFIVKVSCGLKYTLALTKEGQVFAFGENGFGQLGLGHRDECKTPTKIKAFDGLRITQISAGMEHAGAVTENGDVWLWGNNDFGQLGTGDTESRDSPHEAPSTFWNEEIQDIKCGGKHT-VVLSCTGKIYCFGDGQYGQLGVNLRPTQTNLSTPCNV 458
            +YT G +  G LGH ++ ++  P  V AL  ++I  ++CG  HTLA++  G+V++ G    G+LG    +    +P  + SLS+ ++V ++C   HS  ++   E++ +G+    +LG   + +KQ  P+ + +L     ++V+ G  ++  LT  G +F +G N FGQLGL   ++   P  +K+    +I  I  G +H  A+T+ G V+ +G   +GQLG   T    +P +         + +I CG +HT   +  +G+IY FG G  GQLG     + +N  +P  V
Sbjct:   55 VYTCGCNDLGQLGHEKSRKK--PEQVVALDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRYVPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKV-FELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTG---STSNRKSPFTV 341          

HSP 4 Score: 128.257 bits (321), Expect = 9.393e-31
Identity = 84/239 (35.15%), Postives = 129/239 (53.97%), Query Frame = 0
Query:  166 DACDIYTWGASTKGTLGHGEAEEEL-VPRVVEALLGRDIRKIACGFEHTLAVSVTGEVFSMGSGRGGK--LGDNIHDRYMPLKVGSLSEKKVVALSCSELHSAVVTSTGELYSFGRTG-PRLGYSIEGRKQEIPKQVDALKKHFIVKVSCGLKYTLALTKEGQVFAFGENGFGQLGLGHRDECKTPTKIKAFDGLRITQISAGMEHAGA-VTENGDVWLWGNNDFGQLGTGDTESRDSP 399
            D   +Y WG  + G LG   +EE + VPR +++L    I ++ACG+ H+LA+S   EVF  G  + G+  LG +   +  P  + SL     + ++    HS V+T +G ++ +GR    +LG + E  +  +P  + +L+   IV + CG  +T ALTKEG VF FG  G+GQLG         P K+    G  +T+I+ G +H  A V  +G ++ +G    GQLGTG T +R SP
Sbjct:  101 DKGQVYAWGLDSDGQLGLVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGWGRNKFGQLGLNDENDRY-VPNLLKSLRSQKIVYICCGEDHTAALTKEGGVFTFGAGGYGQLGHNSTSHEINPRKVFELMGSIVTEIACGRQHTSAFVPSSGRIYSFGLGGNGQLGTGSTSNRKSP 338          

HSP 5 Score: 96.6709 bits (239), Expect = 9.705e-21
Identity = 69/219 (31.51%), Postives = 108/219 (49.32%), Query Frame = 0
Query:  325 VFAFGENGFGQLGLGHRDE--CKTPTKIKAFDGLRITQISAGMEHAGAVTENGDVWLWGNNDFGQLGTGDTESRDSPHEAPSTFWNEEIQDIKCGGKHTVVLSCTGKIYCFGDGQYGQLGVNLRPTQTNLSTPCNVPIPS--KVVQVDCGIAHTAAVTDNGTLYTWGKGSGARLGH-SDHRDRTTPTLVESLAYKNVQSIACGAHH----TAASVIRAW 534
            +  +G   FGQLGLG  DE     P K   F   R+  +  G+ H   V ++G V+  G ND GQL  G  +SR  P +  +    + I  + CG  HT+ L+  G++Y +G    GQLG  L  ++  +  P N+   S  ++VQV CG  H+ A++    ++ WG+    +LG  +D + +T+P L++SL       +A G  H    T +  I  W
Sbjct:    1 MLCWGNASFGQLGLGGIDEEIVLEPRKSDFFINKRVRDVGCGLRHTVFVLDDGTVYTCGCNDLGQL--GHEKSRKKPEQVVA-LDAQNIVAVSCGEAHTLALNDKGQVYAWGLDSDGQLG--LVGSEECIRVPRNIKSLSDIQIVQVACGYYHSLALSKASEVFCWGQNKYGQLGLGTDCKKQTSPQLLKSLLGIPFMQVAAGGAHSFVLTLSGAIFGW 214          
The following BLAST results are available for this feature:
BLAST of TCONS_00002645-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HERC42.117e-5033.91Probable E3 ubiquitin-protein ligase HERC4 OS=Homo... [more]
back to top