TCONS_00002656-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002656-protein
Unique NameTCONS_00002656-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length101

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002656-protein ID=TCONS_00002656-protein|Name=TCONS_00002656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
AQPALNTKLNDMISNMQEIDKNKNAFSDIFVPPEIFKYIDEGRNPRLYTK
DCLQKVREKKEEVDSKVDAYKNFKGILEEELKKELPQTMDKHSKFKRQQH
K
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001438XLOC_001438Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002656TCONS_00002656Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019145Mediator_Med10
Vocabulary: Cellular Component
TermDefinition
GO:0016592mediator complex
Vocabulary: Molecular Function
TermDefinition
GO:0001104RNA polymerase II transcription cofactor activity
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription from RNA polymerase II promoter
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006357 regulation of transcription from RNA polymerase II promoter
cellular_component GO:0016592 mediator complex
molecular_function GO:0001104 RNA polymerase II transcription cofactor activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019145Mediator complex, subunit Med10PFAMPF09748Med10coord: 2..91
e-value: 4.1E-25
score: 88.0

Blast
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BLAST of TCONS_00002656-protein vs. Swiss-Prot (Human)
Match: MED10 (Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-28
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 0 
Query:    1 AQPALNTKLNDMISNMQEIDKNKNAFSDIFVPPEIFKYIDEGRNPRLYTKDCLQKVREKKEEVDSKVDAYKNFKGILEEELKKELPQTMDKHSKFKRQQH 100
            +Q  LN KLN +++ +Q+IDK +    DI VP E+F+YID+GRNP+LYTK+CL++   K E+V  K+D  K FK +L +EL K  P+ M K+   + + H
Sbjct:   33 SQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMKKFKSLLIQELSKVFPEDMAKYRSIRGEDH 132
The following BLAST results are available for this feature:
BLAST of TCONS_00002656-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED102.097e-2845.00Mediator of RNA polymerase II transcription subuni... [more]
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