TCONS_00002668-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002668-protein
Unique NameTCONS_00002668-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002668-protein ID=TCONS_00002668-protein|Name=TCONS_00002668-protein|organism=Clytia hemisphaerica|type=polypeptide|length=690bp
MFEGKNIHLSPIDGKPLCSFSKKLCRQRRLHNYAFCIRHILEDTDSPFKQ
CPYQTKSGDICINAVPVAAAREYCNKHMLIMGLQPKTTKTQIDKKPVTTT
VKKACSKTIKSKISTNSSKKVMHLMETLQKEDATKSTHARKRQKSYDRYL
SMSVMRRHIWSKQPRSDVMKELIENKKYFRKTKKKKMLTSYTLGTSEDES
DSFIESFQQQCDDNGSHNSSAEKLLTQLKHQHVQLQNIVKEKMKSTSLSY
SVLSTLVTASRENVTETANILTNGNSKNKVYHQKEESITTKIPCCMVTGS
TRCSQMALPFSRYCRNHINEDTDQLLFVPKNIASLQRSDMPGLKIFRPDL
LTKGLKASSSLKAKRKVCRKSNRKRKGAQKKTPKKPSKPKTIAIQASSQS
SQETTSEIDLSDVQHPDNLSIGTPPILSESSSSYTESDSESDILTPEEAF
RLPPGSLSYPPGLDDEDSLTGMHHTARACNIADEEDELMRCGSNFSMDNE
KQDMITRELSSPTLNQFSEFDQSLFGAATAFSPTSGSDVTLPHTSSLTSP
NQEITPLSASFGTNPKYSSKNPSPLKNHTNSHTGHGSVTTLKITPLNMSP
RKAPSKLNVRPPLLTSQSMVKPPLVSNTFTQSSSTKDESWNKQYMQIDNF
GDPDLLNDIAMDDEETPLEKVNPDIFFSSAFPVTTTASND
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001445XLOC_001445Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002668TCONS_00002668Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025927Potential_DNA-bd
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025927Potential DNA-binding domainPFAMPF13891zf-C3Hc3Hcoord: 18..78
e-value: 3.5E-14
score: 52.8
coord: 295..328
e-value: 8.1E-7
score: 29.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 560..607
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 361..445

Blast
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BLAST of TCONS_00002668-protein vs. Swiss-Prot (Human)
Match: IN80D (INO80 complex subunit D OS=Homo sapiens GN=INO80D PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.245e-27
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 0 
Query:    1 MFEGKNIHLSPIDGKPLCSFSKKLCRQRRLHNYAFCIRHILEDTDSPFKQCPYQTK-SGDICINAVPVAAAREYCNKHMLIMGLQPKTTK 89
            M+EGK+IH S +D KPLCS+S KLC+QRRL+ YAFCIRH+LED  +PFKQC Y  K +   C N +P +  R YCN H+ ++G  PK  +
Sbjct:    1 MYEGKHIHFSEVDNKPLCSYSPKLCKQRRLNGYAFCIRHVLEDKTAPFKQCEYVAKYNSQRCTNPIPKSEDRRYCNSHLQVLGFIPKKER 90
The following BLAST results are available for this feature:
BLAST of TCONS_00002668-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IN80D3.245e-2754.44INO80 complex subunit D OS=Homo sapiens GN=INO80D ... [more]
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