TCONS_00002672-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002672-protein
Unique NameTCONS_00002672-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length873

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002672-protein ID=TCONS_00002672-protein|Name=TCONS_00002672-protein|organism=Clytia hemisphaerica|type=polypeptide|length=873bp
MSSTNSLSSVSTQTFLTSLDSTDLKAIEDTFHSFSGKNLVNKSEFGVMLS
QALNKGTLVDYYQLFDMVDISREGLINWDRFSNYLLLEYYEREDRIKTTQ
VPQWQDIRSIPTSHKNSICCILQNTNNGFRYCTVSKDGLVSVFTDRHEVK
RTCQIHTNPEEIRSKDLWVTDATLMPNINKIAFATTSREIWIYDMSLNNE
FVCQYKITGLKFIPLCINYWSNKNNNNSALLTFGDTGGFIHAIFFNSTTS
TLFDKPWKSEQSQEVCFQVNIGTILSGRFASASCLHYKAHSAWVRQIMFI
PLLDCFLTCSTTSNDSIVLAWLGKSRKDVRLTEFKIPLGINGFDYQESMN
LIASAGINNHVCLWNPYVVSKPIGILRGHMQVIVAVQFIHNKYQLVSLSK
DKVLRIWDVNLQICIQRLTGIFPKGPDVNILMHYDQEASALFSTFNYHFQ
VLKMKREVKHRVVSHDSSVTEAIYNEKYGHVISVDESSCITIWFLNTGQK
VKQISEAHGEAELTTVCLDHTQTRILTAGTDGVIKIWDINGNCHHILVVE
KGNPCEITQIVYLKRMILAIGWSRILCYFPSTQLKTYYVYPADWKGKQEH
FDDILSADFSEPRTLVTASYDGDIVFWNTNTQNSIRKITNENKSRLGNRL
PPLSPRKSRQERRNESSMSTKSNKLLTPHSPLRSACLDENTASSITVTSI
AYLKKRNTNSPRTADLYSCHSDGRVRFWNSLTCENLGSFAVYEQFGSLVS
CINSTNELLCVGGENGTCKIFFIDDFLNDKKHDVTIPLHSDANEHEPPQL
LAMFSTHTDVITSVKFIERNGKILLLSSSTDCSVAIHSLDFLIGIFGQKD
HWNVNDVPGISVNDXLVKRSTGM
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001447XLOC_001447Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002672TCONS_00002672Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR0110426-blade_b-propeller_TolB-like
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 615..629
score: 28.7
coord: 525..539
score: 31.83
coord: 395..409
score: 38.93
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 497..538
e-value: 2.5E-4
score: 30.4
coord: 103..144
e-value: 3.8
score: 13.3
coord: 580..628
e-value: 0.5
score: 18.9
coord: 735..772
e-value: 170.0
score: 2.9
coord: 683..729
e-value: 8.6
score: 11.1
coord: 146..194
e-value: 23.0
score: 8.4
coord: 797..838
e-value: 0.066
score: 22.3
coord: 280..322
e-value: 220.0
score: 2.2
coord: 455..494
e-value: 17.0
score: 9.3
coord: 369..408
e-value: 9.7E-5
score: 31.7
coord: 327..365
e-value: 3.8
score: 13.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 506..538
e-value: 0.037
score: 14.8
coord: 371..408
e-value: 0.027
score: 15.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 506..540
score: 9.038
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 376..410
score: 12.113
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 597..637
score: 9.773
IPR011042Six-bladed beta-propeller, TolB-likeGENE3D2.120.10.30coord: 446..589
e-value: 2.7E-13
score: 49.2
NoneNo IPR availableGENE3D1.10.238.10coord: 6..87
e-value: 4.0E-4
score: 19.8
NoneNo IPR availableGENE3D2.130.10.150coord: 590..760
e-value: 5.0E-13
score: 48.5
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 761..844
e-value: 1.2E-6
score: 27.2
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 90..445
e-value: 3.8E-27
score: 94.9
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 395..409
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 615..629
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 525..539
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 287..637
score: 15.716
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 93..247
coord: 282..420
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 469..541
coord: 692..839
coord: 335..442
coord: 592..646
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 9..91

Blast
[Close]
BLAST of TCONS_00002672-protein vs. Swiss-Prot (Human)
Match: WDR49 (WD repeat-containing protein 49 OS=Homo sapiens GN=WDR49 PE=2 SV=1)

HSP 1 Score: 412.149 bits (1058), Expect = 2.135e-132
Identity = 216/541 (39.93%), Postives = 311/541 (57.49%), Query Frame = 0 
Query:  319 LAWLGKSRKDVRLTEFKIPLGINGFDYQESMNLIASAGINNHVCLWNPYVVSKPIGILRGHMQVIVAVQFIHNKYQLVSLSKDKVLRIWDVNLQICIQRLTGIFPKGPDVNILMHYDQEASALFSTFNYHFQVLKMKREVKHRVVSHDSSVTEAIYNEKYGHVISVDESSCITIWFLNTGQKVKQISEAHGEAELTTVCLDHTQTRILTAGTDGVIKIWDINGNCHHILVVEKGNPCEITQIVYLKRMILAIGWSRILCYFPSTQLKTYYVYPADWKGKQEHFDDILSADFSEPRTLVTASYDGDIVFWNTNTQNSIRKITNENKSRLGNRLPPLSPRKSRQERRNESSMSTKSNKLLTPHSPLRSACLDENTASSITVTSIAYLKKR-NTNSPRTADLYSCHSDGRVRFWNSLTCENLGSFAVYEQFGSLVSCINSTNELLCVGGENGTCKIFFIDDF-LNDKKHDVTIPLHSDANEHEPPQLLAMFSTHTDVITSVKFIERNGKILLLSSSTDCSVAIHSL-DFLIGIFGQKDHWNVND 856
            +AW  KS+K + +T F I  GI+ FDY   +NLIA+AGINN VCLWNPYVVSKP+G+L GH   ++AVQF   + QL S SKDKVLR+WD+  Q+ IQR+   FPK  D   L H+D+    LF +FN    +L MK E   RV SH+ +VT  +YN     VIS D  S ++ W ++TGQK+KQ +  HG AE++T+ LD  +TR+LT  TDG +KIWD NG CHH L V +    +I+QI+ LK+ IL  GW R +  F       +++ P +WKG  +H DDIL A F  P+TLVT SYDG+IV WN +T+N+   +  + +  L ++L    P+K     R++ S        +  HS       + +T     V  + +LK R NT     A+L SC   G VRFW+    + L  F  +   GS++   +  N  L  G  +G  KI+ I+++ LN  K+ +T          + P L+  F  H D I+S++  E  G++L++SSS DCS+ +  + +  + IFGQ  HW++ +
Sbjct:    1 MAWREKSKKRLNMTSFNIAQGIHAFDYHSRLNLIATAGINNKVCLWNPYVVSKPVGVLWGHSASVIAVQFFVERKQLFSFSKDKVLRLWDIQHQLSIQRIACSFPKSQDFRCLFHFDEAHGRLFISFNNQLALLAMKSEASKRVKSHEKAVTCVLYNSILKQVISSDTGSTVSFWMIDTGQKIKQFTGCHGNAEISTMALDANETRLLTGSTDGTVKIWDFNGYCHHTLNVGQDGAVDISQILILKKKILVTGWERAITVFRPQNFNQFFIQPEEWKGGIQHHDDILCAAFLPPQTLVTGSYDGEIVLWNNSTENAHHVLHPDYQRLLKSKL-DTKPQKLLSAGRSQPSHP------MADHSTTGVRNFEIDTEGKNAVMRLCFLKARKNTAVTGGANLVSCGGSGYVRFWDIYKKQLLAEFLAHSGVGSIIMSTDKMNRYLTTGDLDGWLKIWNIEEYCLNSSKNKIT----------KAPTLIRSFQPHEDRISSLEMCEPGGQLLIISSSADCSICVTGVCNAPVWIFGQAKHWHIEN 524
The following BLAST results are available for this feature:
BLAST of TCONS_00002672-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WDR492.135e-13239.93WD repeat-containing protein 49 OS=Homo sapiens GN... [more]
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