TCONS_00002729-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002729-protein
Unique NameTCONS_00002729-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002729-protein ID=TCONS_00002729-protein|Name=TCONS_00002729-protein|organism=Clytia hemisphaerica|type=polypeptide|length=751bp
MNKLPSSTVKLISSSQVIKSVWNVVKELVENSLDAGSDCIDVRLEQSGLQ
KIEVNDNGPGIPKEQIEHLCKPYFTSKLSSFEDLETLQTCGFRGEALHSI
CTIARISVITKTALDDVATLFEFDSNGSVVESKPTHHGNGTTIIVKDLFK
DLPVRKQNLKSTKAQKDEVKRIEDLLMGFSLAYCNLRITLTNDKKEIWRK
NRTASPSFSIREIFKSRVANALEEILIEDSEFQIHGFVPKKDCDVQVVSR
STGDRIFLSVNKRPVAISSLKKTLKENFVLSNPGVNKYPFAVLEITLDPK
LIDVNLEADKTRVDIINIEKITAALSNKLQLLYDTYKPMSSEVNIETEKP
ESQSSGPKLPSVDIFINESQDTECQVRAILTDEAPAQQSSLQPDFVVENQ
QNTTPNITDEVISIVNDPVANEKWRKGNFEISPPVTLLTGPPRTPGEGTS
KNNTAPEKVNTNFKSKESRKRRSSGTNDEAFTKLEKFFKSPEQRKRRYRQ
RKSETVEVSVKKMKESFNEKPMISKSSFKIIGNIKETSIWVVQHSKKMYA
LDKQRLSELMIYNKLIDKHQLAPKPLDRPIRLDQHFCRMLGRTQFDHLCG
LPAEPIQTSPGRFIQHNSIKGNGFLIKKSSKQHLGQSLVQENLTDLYDDI
TSNDSLVCTHMTDQIPNYGIEDLIEIINNIEKDEFYRPRKVLEWIKEEAR
RISESNPTCSIGEFKESFQWLLNQHQQFHDVNSIHGNPLSCALKIPSDIM
Q
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001464XLOC_001464Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002729TCONS_00002729Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013507DNA_mismatch_repair_C
IPR002099DNA_mismatch_repair_fam
IPR014721Ribosomal_S5_D2-typ_fold_subgr
IPR003594HATPase_C
IPR014762DNA_mismatch_repair_CS
IPR020568Ribosomal_S5_D2-typ_fold
Vocabulary: Biological Process
TermDefinition
GO:0006298mismatch repair
Vocabulary: Molecular Function
TermDefinition
GO:0030983mismatched DNA binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006298 mismatch repair
molecular_function GO:0005524 ATP binding
molecular_function GO:0030983 mismatched DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013507DNA mismatch repair protein, C-terminalSMARTSM01340DNA_mis_repair_2coord: 210..334
e-value: 2.4E-22
score: 90.2
IPR013507DNA mismatch repair protein, C-terminalPFAMPF01119DNA_mis_repaircoord: 210..332
e-value: 1.8E-19
score: 69.5
IPR002099DNA mismatch repair protein familyTIGRFAMTIGR00585TIGR00585coord: 2..313
e-value: 2.8E-81
score: 271.5
IPR014721Ribosomal protein S5 domain 2-type fold, subgroupGENE3D3.30.230.10coord: 204..334
e-value: 1.3E-20
score: 73.0
NoneNo IPR availablePFAMPF13589HATPase_c_3coord: 20..113
e-value: 7.6E-9
score: 35.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 432..478
NoneNo IPR availableCDDcd00782MutL_Transcoord: 209..333
e-value: 2.96771E-23
score: 95.3009
NoneNo IPR availableCDDcd00075HATPase_ccoord: 24..146
e-value: 3.60447E-11
score: 59.9678
IPR003594Histidine kinase-like ATPase, C-terminal domainGENE3D3.30.565.10coord: 15..203
e-value: 2.5E-34
score: 118.4
IPR003594Histidine kinase-like ATPase, C-terminal domainSUPERFAMILY55874ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinasecoord: 3..204
IPR014762DNA mismatch repair, conserved sitePROSITEPS00058DNA_MISMATCH_REPAIR_1coord: 91..97
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 192..333

Blast
[Close]
BLAST of TCONS_00002729-protein vs. Swiss-Prot (Human)
Match: PMS1 (PMS1 protein homolog 1 OS=Homo sapiens GN=PMS1 PE=1 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 3.212e-79
Identity = 152/377 (40.32%), Postives = 224/377 (59.42%), Query Frame = 0 
Query:    1 MNKLPSSTVKLISSSQVIKSVWNVVKELVENSLDAGSDCIDVRLEQSGLQKIEVNDNGPGIPKEQIEHLCKPYFTSKLSSFEDLETLQTCGFRGEALHSICTIARISVITKTALDDVATLFEFDSNGSVVESKPTHHGNGTTIIVKDLFKDLPVRKQNLKSTKAQKDEVKRIEDLLMGFSLAYCNLRITLTNDKKEIWRKNRTASPSFSIREIFKSRVANALEEILIEDSEFQIH--GFVPKKDCDVQVVSRSTGDRIFLSVNKRPVAISSLKKTLKENFVLS--NPGVNKYPFAVLEITLDPKLIDVNLEADKTRVDIINIEKITAALSNKLQLLYDTYKPMSSEVNIETEKPESQSSGPKLPSVDIFINESQDTE 373
            M +LP++TV+L+SSSQ+I SV +VVKEL+ENSLDAG+  +DV+LE  G  KIEV DNG GI       +   Y+TSK++S EDLE L T GFRGEAL SIC IA + + T+TA D+ +T +  D +G ++  KP+H G GTT+    LFK+LPVRKQ   + K  KDE+K+I+DLLM F +   +LRI   ++K  IW+K+R +    ++  +  + V N +E       E QI+  GF+PK D D    S ST +R F+ +N RPV    + K ++ ++ L         YP   L+I +    +DVNL  DK++V + N E +  AL N   L+   Y P+ S  + E  K +       + + DI ++++ +T+
Sbjct:    1 MKQLPAATVRLLSSSQIITSVVSVVKELIENSLDAGATSVDVKLENYGFDKIEVRDNGEGIKAVDAPVMAMKYYTSKINSHEDLENLTTYGFRGEALGSICCIAEVLITTRTAADNFSTQYVLDGSGHILSQKPSHLGQGTTVTALRLFKNLPVRKQFYSTAKKCKDEIKKIQDLLMSFGILKPDLRIVFVHNKAVIWQKSRVSDHKMALMSVLGTAVMNNMESFQYHSEESQIYLSGFLPKCDADHSFTSLSTPERSFIFINSRPVHQKDILKLIRHHYNLKCLKESTRLYPVFFLKIDVPTADVDVNLTPDKSQVLLQNKESVLIALEN---LMTTCYGPLPSTNSYENNKTD-------VSAADIVLSKTAETD 367
The following BLAST results are available for this feature:
BLAST of TCONS_00002729-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PMS13.212e-7940.32PMS1 protein homolog 1 OS=Homo sapiens GN=PMS1 PE=... [more]
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