TCONS_00002735-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002735-protein
Unique NameTCONS_00002735-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length478

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002735-protein ID=TCONS_00002735-protein|Name=TCONS_00002735-protein|organism=Clytia hemisphaerica|type=polypeptide|length=478bp
MGEDIEMKDETPEKSQAEIEKLSYEDIKEQLRQVEKSVLNKEPRFISRVL
RSLVSTRKKLNEKILTKLVSLYALSASKSTLLGFFDAKQGEEEKLPPKKS
GIQSLPETDVYLHLLCCIYFIDKKNNEKALACSESLVDKVSAYNRRTLDS
LAAVCYFYHSRIYEILGQLQDIRSFLHTRLRTATLRHDADGQVMLQNLLL
RNYINYNLYDQADKLVSKSTFPESASNNDWARYLYYIGLIKAIQLDYSEA
HKNLMNAIRKAPQNVAIGFKQHVHRLAIVVQLLLGEIPDRKTFRETFLKK
TLAPYYQLTQAVRTGNLNLFNQTVEQHKEKFLAEKTYTLIIRLRHNVIKT
GIRMISLSYSRISLNDIAAKLCLDSADDAEFIVSKAIRDGVIDATIDHEM
KCVQSKENVDVYTTNEPQNAFHQRISFCLDIYNQSVKAMRYPAKSYNKDL
ETLEEQREREKQDLEYAKEIAEDDDDFP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001469XLOC_001469Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002735TCONS_00002735Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000717PCI_dom
IPR011990TPR-like_helical_dom
IPR011991WHTH_DNA-bd_dom
IPR01358626S_Psome_reg_C
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0030234enzyme regulator activity
Vocabulary: Biological Process
TermDefinition
GO:0042176regulation of protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0000502proteasome complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042176 regulation of protein catabolic process
cellular_component GO:0000502 proteasome complex
molecular_function GO:0030234 enzyme regulator activity
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 443..474
NoneNo IPR availableSMARTSM00753PINTcoord: 338..428
e-value: 3.2E-24
score: 96.5
IPR000717Proteasome component (PCI) domainSMARTSM00088PINT_4coord: 338..428
e-value: 3.2E-24
score: 96.5
IPR000717Proteasome component (PCI) domainPFAMPF01399PCIcoord: 304..406
e-value: 4.8E-25
score: 88.0
IPR011990Tetratricopeptide-like helical domainGENE3D1.25.40.10coord: 27..272
e-value: 3.6E-5
score: 22.9
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 332..416
e-value: 7.7E-17
score: 60.6
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 343..412
IPR01358626S proteasome regulatory subunit, C-terminalPFAMPF08375Rpn3_Ccoord: 410..476
e-value: 6.0E-27
score: 93.8

Blast
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BLAST of TCONS_00002735-protein vs. Swiss-Prot (Human)
Match: PSMD3 (26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2)

HSP 1 Score: 561.607 bits (1446), Expect = 0.000e+0
Identity = 302/501 (60.28%), Postives = 373/501 (74.45%), Query Frame = 0 
Query:    4 DIEMKDETP------------------EKSQAEIEKLSYEDIKEQLRQVEKSVLNKEPRFISRVLRSLVSTRKKLNEKILTKLVSLYALS--ASKSTLLGFFDAKQGEEEKLP--PKKSGIQS---LPETDVYLHLLCCIYFIDKKNNEKALACSESLVDKVSAYNRRTLDSLAAVCYFYHSRIYEILGQLQDIRSFLHTRLRTATLRHDADGQVMLQNLLLRNYINYNLYDQADKLVSKSTFPESASNNDWARYLYYIGLIKAIQLDYSEAHKNLMNAIRKAPQNVAIGFKQHVHRLAIVVQLLLGEIPDRKTFRETFLKKTLAPYYQLTQAVRTGNLNLFNQTVEQHKEKFLAEKTYTLIIRLRHNVIKTGIRMISLSYSRISLNDIAAKLCLDSADDAEFIVSKAIRDGVIDATIDHEMKCVQSKENVDVYTTNEPQNAFHQRISFCLDIYNQSVKAMRYPAKSYNKDLETLEEQREREKQDLEYAKEIAEDDDD-FP 478
            D+EMK+E                    E SQ E++ ++ EDIKE ++Q+EK+V  KEPRF+ R LR L ST ++LN  +L K V  +  S  A++  LL F +     E  L   P+     S   LPE + YL LL  I+ ++ K  ++A   S+ L+ K+S  NRR LD +AA CY+YH+R+YE L +L  +RSFLH RLRTATLRHDADGQ  L NLLLRNY++Y+LYDQA+KLVSKS FPE A+NN+WARYLYY G IKAIQL+YSEA + + NA+RKAPQ+ A+GFKQ VH+L IVV+LLLGEIPDR  FR+  LK++L PY+ LTQAVRTGNL  FNQ ++Q  EKF A+ TYTLIIRLRHNVIKTG+RMISLSYSRISL DIA KL LDS +DAEFIV+KAIRDGVI+A+I+HE   VQSKE +D+Y+T EPQ AFHQRISFCLDI+N SVKAMR+P KSYNKDLE+ EE+RERE+QDLE+AKE+AEDDDD FP
Sbjct:   34 DVEMKEEAATGGGSTGEADGKTAAAAAEHSQRELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRRLNHYVLYKAVQGFFTSNNATRDFLLPFLEEPMDTEADLQFRPRTGKAASTPLLPEVEAYLQLLVVIFMMNSKRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQVLDQFGEKFQADGTYTLIIRLRHNVIKTGVRMISLSYSRISLADIAQKLQLDSPEDAEFIVAKAIRDGVIEASINHEKGYVQSKEMIDIYSTREPQLAFHQRISFCLDIHNMSVKAMRFPPKSYNKDLESAEERREREQQDLEFAKEMAEDDDDSFP 534
The following BLAST results are available for this feature:
BLAST of TCONS_00002735-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSMD30.000e+060.2826S proteasome non-ATPase regulatory subunit 3 OS=... [more]
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