TCONS_00002749-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002749-protein
Unique Name	TCONS_00002749-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	191

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002749-protein ID=TCONS_00002749-protein|Name=TCONS_00002749-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MQRKLYRQDSSGSDTYEPDTSGKVKEKRNAHTAAEQKRRDAIKNALVNLQ
QLVPGCNSCEMSHGMITKTSKAQVLQKAIEYVTYLSNDRDRKNEEINEME
KKLVALKIVKENYENLVESSQHHDKPQISDEMKLSVFQQLMSSLWENFNT
TVSVGSFQSLSGSMIRWVEEHCKPDIIKTIIVSAMKHLLGH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001477	XLOC_001477	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002749	TCONS_00002749	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011598	bHLH_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0046983	protein dimerization activity

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046983	protein dimerization activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 82..116
None	No IPR available	COILS	Coil	Coil	coord: 24..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SMART	SM00353	finulus	coord: 32..91 e-value: 1.9E-12 score: 57.4
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	GENE3D	4.10.280.10		coord: 25..102 e-value: 2.4E-19 score: 68.7
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 27..85 e-value: 1.9E-14 score: 53.3
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 26..85 score: 16.005
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	CDD	cd00083	HLH	coord: 25..87 e-value: 7.90204E-12 score: 56.4535
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 25..109

Blast

[Close]

BLAST of TCONS_00002749-protein vs. Swiss-Prot (Human)
Match: MLX (Max-like protein X OS=Homo sapiens GN=MLX PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.141e-43
Identity = 74/165 (44.85%), Postives = 111/165 (67.27%), Query Frame = 0

Query:   27 KRNAHTAAEQKRRDAIKNALVNLQQLVPGCNSCEMSHGMITKTSKAQVLQKAIEYVTYLSNDRDRKNEEINEMEKKLVALKIVKENYENLVESSQ---HHDKPQISDEMKLSVFQQLMSSLWENFNTTVSVGSFQSLSGSMIRWVEEHCKPDIIKTIIVSAMKHL 188
            +R AHT AEQKRRDAIK    +LQ +VP C   + S G   K SKA VLQK I+Y+ +L  ++ ++ EE++ + K + ALKI+K NYE +V++ Q   H  + Q+SD++K +VFQ +M SL+++FN ++SV SFQ LS  +  W+EEHCKP  ++ I++  +  L
Sbjct:  130 RRRAHTQAEQKRRDAIKRGYDDLQTIVPTCQQQDFSIGS-QKLSKAIVLQKTIDYIQFLHKEKKKQEEEVSTLRKDVTALKIMKVNYEQIVKAHQDNPHEGEDQVSDQVKFNVFQGIMDSLFQSFNASISVASFQELSACVFSWIEEHCKPQTLREIVIGVLHQL 293

The following BLAST results are available for this feature:

BLAST of TCONS_00002749-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002749-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MLX	1.141e-43	44.85	Max-like protein X OS=Homo sapiens GN=MLX PE=1 SV=...	[more]

You are here

TCONS_00002749-protein (polypeptide) - C. hemisphaerica