TCONS_00002792-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002792-protein
Unique NameTCONS_00002792-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length286

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002792-protein ID=TCONS_00002792-protein|Name=TCONS_00002792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=286bp
MEESENLLVVILDINAKQWSQRVEEFKKVVDSVMVFCNSYLMMNHSNKLA
FYTCNHSNATILYPAELDENESRILDGKFELFVELNTILSRKIKALVNEI
DGKIGDQPTTSLLSGAFSQALCYIHKKKNEDPSGQRLSSRILVIKASPDV
SSQYMPVMNCIFASQKHNIAVDSCSLFHRSGFLQQAADITGGTYNFVDNV
SGFLELLIWIYLPEKGVREKFELPTNVEIDYRAACFCHNTLIEMGFVCSV
CLSIYCKFMPKCLTCQTRFRLPQLPPMKGKKKKKVA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001520XLOC_001520Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002792TCONS_00002792Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004600TFIIH_Tfb4/p34
Vocabulary: Cellular Component
TermDefinition
GO:0000439core TFIIH complex
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006289nucleotide-excision repair
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006289 nucleotide-excision repair
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0000439 core TFIIH complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004600TFIIH subunit Tfb4/p34PFAMPF03850Tfb4coord: 6..266
e-value: 1.5E-83
score: 280.4

Blast
[Close]
BLAST of TCONS_00002792-protein vs. Swiss-Prot (Human)
Match: TF2H3 (General transcription factor IIH subunit 3 OS=Homo sapiens GN=GTF2H3 PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.052e-80
Identity = 132/295 (44.75%), Postives = 178/295 (60.34%), Query Frame = 0 
Query:    2 EESENLLVVILDINAKQWS-QRVEE----FKKVVDSVMVFCNSYLMMNHSNKLAFYTCNHSNATILYPAELDE--------------NESRILDGKFELFVELNTILSRKIKALVNEIDGKIGDQPTTSLLSGAFSQALCYIHKKKNEDPSGQRLSSRILVIKASPDVSSQYMPVMNCIFASQKHNIAVDSCSLFHRSGFLQQAADITGGTYNFVDNVSGFLELLIWIYLPEKGVREKFELPTNVEIDYRAACFCHNTLIEMGFVCSVCLSIYCKFMPKCLTCQTRFRLPQLPPM 277
            E+  NLLV+++D N   W  Q ++E      K +D+VMV  NS+L MN SNKLA    +   +  LYP +                 N S   DGK+EL    N ++  +IK L+ + D  I  Q T +LL+G+ ++ALCYIH+   E    Q + SRILVIKA+ D + QYM  MN IFA+QK NI +D+C L   SG LQQA DITGG Y  V  +   L+ L+W++LP++  R +  LP  V +DYRAACFCH  LIE+G+VCSVCLSI+C F P C TC+T F++  LPP+
Sbjct:    5 EDELNLLVIVVDANPIWWGKQALKESQFTLSKCIDAVMVLGNSHLFMNRSNKLAVIASHIQESRFLYPGKNGRLGDFFGDPGNPPEFNPSGSKDGKYELLTSANEVIVEEIKDLMTKSD--IKGQHTETLLAGSLAKALCYIHRMNKEVKDNQEMKSRILVIKAAEDSALQYMNFMNVIFAAQKQNILIDACVLDSDSGLLQQACDITGGLYLKVPQMPSLLQYLLWVFLPDQDQRSQLILPPPVHVDYRAACFCHRNLIEIGYVCSVCLSIFCNFSPICTTCETAFKI-SLPPV 296
The following BLAST results are available for this feature:
BLAST of TCONS_00002792-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TF2H31.052e-8044.75General transcription factor IIH subunit 3 OS=Homo... [more]
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