TCONS_00002806-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002806-protein
Unique Name	TCONS_00002806-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	268

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002806-protein ID=TCONS_00002806-protein|Name=TCONS_00002806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=268bp
PNSTISKKMSYNFTGKVILVTGASSGIGAGTAVYFAKNGAKVAITGRNED
NLKKIAQKCEEASPTKEKPLLIVGDLAKESDVEKVMNETINHFQQLDVLV
NNAGIYTAGNCQSLTMDTYDKQMNVNMRSVFYLTKLACPHLIKTKGNIIN
VSSLSSLRANTHAVAYSLSKAALDQFTRTTALELASHKVRCNAVNPGVID
TEIFVTSGLTEEQRDGLMKRTADMYPLGRHGEVVEVASVIAFLASDSASF
ITGAIVPVDGGMNLACPR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001531	XLOC_001531	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002806	TCONS_00002806	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00080	SDRFAMILY	coord: 146..154 score: 52.74 coord: 166..185 score: 41.71 coord: 94..105 score: 57.05
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 140..156 score: 33.89 coord: 226..246 score: 43.05 coord: 166..185 score: 41.35 coord: 94..105 score: 57.49 coord: 187..204 score: 37.37 coord: 17..34 score: 46.95
None	No IPR available	GENE3D	3.40.50.720		coord: 62..267 e-value: 2.5E-62 score: 210.1 coord: 8..61 e-value: 1.3E-13 score: 50.2
None	No IPR available	PFAM	PF13561	adh_short_C2	coord: 22..263 e-value: 4.8E-67 score: 225.8
IPR016040	NAD(P)-binding domain	SUPERFAMILY	51735	NAD(P)-binding Rossmann-fold domains	coord: 15..264

Blast

[Close]

BLAST of TCONS_00002806-protein vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 3.779e-38
Identity = 86/260 (33.08%), Postives = 127/260 (48.85%), Query Frame = 0

Query:    9 MSYNFTGKVILVTGASSGIGAGTAVYFAKNGAKVAITGRNEDNLKKIAQKCEEASPTKEKPLLIVGDLAKESDVEKVMNETINHFQQLDVLVNNAGIYTAGNCQSLTMDTYDKQMNVNMRSVFYLTKLACPHLIK--TKGNIINVSSLSSLRANTHAVAYSLSKAALDQFTRTTALELASHKVRCNAVNPGVIDTEIFVTSGLTEEQRDGLMKRTADMYPLGRHGEVVEVASVIAFLASDSASFITGAIVPVDGGMNLAC 266
            M     G+ +LVTGA  GIG GT       GA+V    R + +L  + ++C    P       +  DL      E+ +         +D+LVNNA +        +T + +D+   VN+R+V  ++++    LI     G I+NVSS  S RA T+   Y  +K ALD  T+  ALEL  HK+R NAVNP V+ T +   +     +   ++ R     PLG+  EV  V + I FL SD +   TG+ +PV+GG   AC
Sbjct:    1 MELFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEP-------VCVDLGDWEATERALGSV----GPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKAKTMLNR----IPLGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGGF-WAC 244

The following BLAST results are available for this feature:

BLAST of TCONS_00002806-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002806-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DCXR	3.779e-38	33.08	L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ...	[more]

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TCONS_00002806-protein (polypeptide) - C. hemisphaerica