TCONS_00002809-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002809-protein
Unique NameTCONS_00002809-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002809-protein ID=TCONS_00002809-protein|Name=TCONS_00002809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp
MDSHTHFQFLKMQNIRNQKTKLTRLSSTLLQQRRCLSLTAQHLNNWNPVI
RKRNTDVGKHVFEAFSVRTLIDQHPELNGGEIHDVTQGLVKTEMLVDKLQ
DSSTLPSCEAVEDIFSKIGELKLQKNVTELDAVLREFSEKIFDGLSQREK
LFLMKTRHPKHILKTICNSKNMELTVEVDFDCDESECIVFITCGDKELQM
RMPKDKSIAEVEHDVCLLLLNDHFSEEFNAFKFRLSEVVDESTILLNPKA
PVKREVSLQKISEESFGFTIRGGERKAVRNDEYLQQYITTPVFISDIIAG
SPAEKAGLMVGDVLLAVSDHVLQDMGHQQVVLSLKKFANVSSVTFTVKHS
KQEVLKYEAEQRFIERQKEKVREEIRCKNMSKWHDAKAKLDPEEYLLERL
KEKKKTYVAKKPRQSRRLWDY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001533XLOC_001533Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002809TCONS_00002809Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001478PDZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 354..374
NoneNo IPR availableGENE3D2.30.42.10coord: 253..377
e-value: 9.3E-21
score: 73.6
NoneNo IPR availableCDDcd00992PDZ_signalingcoord: 254..348
e-value: 1.10815E-17
score: 76.4514
IPR001478PDZ domainSMARTSM00228pdz_newcoord: 264..351
e-value: 1.1E-17
score: 74.8
IPR001478PDZ domainPFAMPF00595PDZcoord: 256..347
e-value: 3.8E-11
score: 43.1
IPR001478PDZ domainPROSITEPS50106PDZcoord: 255..349
score: 16.747
IPR001478PDZ domainSUPERFAMILY50156PDZ domain-likecoord: 235..352

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002809-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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