TCONS_00002816-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002816-protein
Unique NameTCONS_00002816-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length208

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002816-protein ID=TCONS_00002816-protein|Name=TCONS_00002816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MDYWYKVTVTNFFSKKGPPLSTLVHPICSRHAADAFRVNVIHARGQIRSP
VTHIAGTSFFHVKRGNVWIAAVSKQNCNAALVFEFLFKTVEVMANYFGKV
SEENVKNNFVLIYELLDEINDFGYPQKTDVGILKTFITQQGIRSQTREEQ
AQITSQVTGQIGWRREGIKYRRNELFLDVLESANLLMSPQGKYSTQTLFW
IIVRLVNF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001535XLOC_001535Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002816TCONS_00002816Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR018240Clathrin_mu_CS
IPR011012Longin-like_dom
IPR028565MHD
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
GO:0016192vesicle-mediated transport
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0030131clathrin adaptor complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006810 transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030131 clathrin adaptor complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.60.40.1170coord: 154..203
e-value: 1.1E-10
score: 40.8
NoneNo IPR availableGENE3D3.30.450.60coord: 6..145
e-value: 2.8E-30
score: 104.5
IPR018240Clathrin adaptor, mu subunit, conserved sitePROSITEPS00990CLAT_ADAPTOR_M_1coord: 161..181
IPR011012Longin-like domainSUPERFAMILY64356SNARE-likecoord: 25..143
IPR028565Mu homology domainSUPERFAMILY49447Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptorcoord: 161..196

Blast
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BLAST of TCONS_00002816-protein vs. Swiss-Prot (Human)
Match: AP2M1 (AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 PE=1 SV=2)

HSP 1 Score: 280.411 bits (716), Expect = 9.596e-94
Identity = 133/165 (80.61%), Postives = 150/165 (90.91%), Query Frame = 0 
Query:   30 RHAADAFRVNVIHARGQIRSPVTHIAGTSFFHVKRGNVWIAAVSKQNCNAALVFEFLFKTVEVMANYFGKVSEENVKNNFVLIYELLDEINDFGYPQKTDVGILKTFITQQGIRS--QTREEQAQITSQVTGQIGWRREGIKYRRNELFLDVLESANLLMSPQGK 192
            R+A DAFRVNVIHAR Q+RSPVT+IA TSFFHVKR N+W+AAV+KQN NAA+VFEFL+K  +VMA YFGK+SEEN+KNNFVLIYELLDEI DFGYPQ ++ G LKTFITQQGI+S  QT+EEQ+QITSQVTGQIGWRREGIKYRRNELFLDVLES NLLMSPQG+
Sbjct:   26 RNAVDAFRVNVIHARQQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFGKISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQGIKSQHQTKEEQSQITSQVTGQIGWRREGIKYRRNELFLDVLESVNLLMSPQGQ 190
The following BLAST results are available for this feature:
BLAST of TCONS_00002816-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP2M19.596e-9480.61AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 P... [more]
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