TCONS_00002819-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002819-protein
Unique NameTCONS_00002819-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length161

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002819-protein ID=TCONS_00002819-protein|Name=TCONS_00002819-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
MRYRTTKDISLPFRVIPLVREVARTKMEVKVVLKSHYKPSILGQKIEIRI
PTPPSTAGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLP
TRDTKKWTRPPISLNFEVPFSCSGLKVRYLKVFESKLNYSDHDVIKWVRY
ISKSGLYETRC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001536XLOC_001536Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002819TCONS_00002819Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001392Clathrin_mu
IPR028565MHD
Vocabulary: Biological Process
TermDefinition
GO:0016192vesicle-mediated transport
GO:0006886intracellular protein transport
Vocabulary: Cellular Component
TermDefinition
GO:0030131clathrin adaptor complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006886 intracellular protein transport
biological_process GO:0016192 vesicle-mediated transport
cellular_component GO:0030131 clathrin adaptor complex
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001392Clathrin adaptor, mu subunitPRINTSPR00314CLATHRINADPTcoord: 78..89
score: 63.64
coord: 38..53
score: 45.45
IPR028565Mu homology domainPFAMPF00928Adap_comp_subcoord: 1..161
e-value: 1.6E-32
score: 112.9
IPR028565Mu homology domainPROSITEPS51072MHDcoord: 1..160
score: 24.91
IPR028565Mu homology domainSUPERFAMILY49447Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptorcoord: 1..160
NoneNo IPR availableGENE3D2.60.40.1170coord: 11..122
e-value: 5.4E-29
score: 100.2

Blast
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BLAST of TCONS_00002819-protein vs. Swiss-Prot (Human)
Match: AP2M1 (AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 PE=1 SV=2)

HSP 1 Score: 294.664 bits (753), Expect = 3.620e-100
Identity = 139/161 (86.34%), Postives = 151/161 (93.79%), Query Frame = 0 
Query:    1 MRYRTTKDISLPFRVIPLVREVARTKMEVKVVLKSHYKPSILGQKIEIRIPTPPSTAGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTRDTKKWTRPPISLNFEVPFSCSGLKVRYLKVFESKLNYSDHDVIKWVRYISKSGLYETRC 161
            MRYRTTKDI LPFRVIPLVREV RTK+EVKVV+KS++KPS+L QKIE+RIPTP +T+GVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPT D KKW RPPIS+NFEVPF+ SGLKVRYLKVFE KLNYSDHDVIKWVRYI +SG+YETRC
Sbjct:  275 MRYRTTKDIILPFRVIPLVREVGRTKLEVKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKGKAKYKASENAIVWKIKRMAGMKESQISAEIELLPTNDKKKWARPPISMNFEVPFAPSGLKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGIYETRC 435
The following BLAST results are available for this feature:
BLAST of TCONS_00002819-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AP2M13.620e-10086.34AP-2 complex subunit mu OS=Homo sapiens GN=AP2M1 P... [more]
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