TCONS_00002838-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002838-protein
Unique Name	TCONS_00002838-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	424

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002838-protein ID=TCONS_00002838-protein|Name=TCONS_00002838-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
MTEIEEKATPTENKYSDDDLGILLKHYYKRLFPTKLYHKWLQYGEGTTTF
ENREFSFTLKDDIYIRYMSFGDASDLDKELQKRVPYKIDIGAVYNHKPKD
NKTLQAGVFKPLEKELVFDIDMTDYDDVRTCCSGAAICKKCWPFMNLAIK
IIDKVLSDDFGFKHRLWVYSGRRGVHCWVADETARKLTQAGRSAVAEYIN
VIKGGESQNKKVQFRGTNHELHPSLERAKAHVTKYFNDSYLTDQNILENE
EQRELMLKLIPDEKTRKTVSEQWEKMGSSASTEELWTYLSQTVEEKHFNK
HIADEIMFQYVYPRLDINVSKGLNHLLKSPFCIHPKTGRVCVPINPSKVD
EFEPEKVPTISQLMEELDEAKKLSDGNTQDTKDSKEYMSTSLRDSIVLFK
KFVTSLDVQLRGDKPVKQENKIDW

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001547	XLOC_001547	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002838	TCONS_00002838	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR014052	DNA_primase_ssu_euk/arc
IPR002755	DNA_primase_S

Vocabulary: **Molecular Function**
Term	Definition
GO:0003896	DNA primase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006269	DNA replication, synthesis of RNA primer

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006269	DNA replication, synthesis of RNA primer
molecular_function	GO:0003896	DNA primase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014052	DNA primase, small subunit, eukaryotic/archaeal	TIGRFAM	TIGR00335	TIGR00335	coord: 25..366 e-value: 1.4E-68 score: 229.6
IPR014052	DNA primase, small subunit, eukaryotic/archaeal	CDD	cd04860	AE_Prim_S	coord: 33..354 e-value: 6.54703E-103 score: 306.848
None	No IPR available	GENE3D	3.90.920.10		coord: 21..267 e-value: 7.6E-83 score: 277.2 coord: 268..379 e-value: 1.0E-20 score: 73.7
None	No IPR available	SUPERFAMILY	56747	Prim-pol domain	coord: 23..372
IPR002755	DNA primase, small subunit	PFAM	PF01896	DNA_primase_S	coord: 118..345 e-value: 3.0E-63 score: 213.1

Blast

[Close]

BLAST of TCONS_00002838-protein vs. Swiss-Prot (Human)
Match: PRI1 (DNA primase small subunit OS=Homo sapiens GN=PRIM1 PE=1 SV=1)

HSP 1 Score: 397.512 bits (1020), Expect = 1.951e-136
Identity = 200/412 (48.54%), Postives = 275/412 (66.75%), Query Frame = 0

Query:   19 DLGILLKHYYKRLFPTKLYHKWLQYGEGTTT-FENREFSFTLKDDIYIRYMSFGDASDLDKELQKRVPYKIDIGAVYNHKPKDNKTLQAGVFKPLEKELVFDIDMTDYDDVRTCCSGAAICKKCWPFMNLAIKIIDKVLSDDFGFKHRLWVYSGRRGVHCWVADETARKLTQAGRSAVAEYINVIKGGESQNKKVQFRGTNHELHPSLERAKAHVTKYFNDSYLTDQNILENEEQRELMLKLIPD----------EKTRKTVSEQWEKMGSSASTEELWTYLSQTVEEKHFNKHIADEIMFQYVYPRLDINVSKGLNHLLKSPFCIHPKTGRVCVPINPSKVDEFEPEKVPTISQLMEELDEAKKLSDGNTQDTKDS------KEYMSTSLRDSIVLFKKFVTSLDVQLRGD 413
            +L  LLK YY+RLFP   Y++WL YG      F++REFSFTLKDDIYIRY SF + SDL+KE+QK  PYKIDIGAVY+H+P  + T++ G F+  EKELVFDIDMTDYDDVR CCS A IC KCW  M +AI+IID+ L +DFGFKHRLWVYSGRRGVHCWV DE+ RKL+ A RS + EY++++KGG+   KKV     + ++HP + ++   + KYF +  L +Q+ILEN+E  + +L L+P+          +K+  ++ ++WE +   AS  +        ++   +   +  EIM QY +PRLDINVSKG+NHLLKSPF +HPKTGR+ VPI+  KVD+F+P  VPTIS +  ELD      +   ++  +S      ++Y  TSL   + +F+ F+ +LD   +G+
Sbjct:    8 ELPELLKLYYRRLFPYSQYYRWLNYGGVIKNYFQHREFSFTLKDDIYIRYQSFNNQSDLEKEMQKMNPYKIDIGAVYSHRPNQHNTVKLGAFQAQEKELVFDIDMTDYDDVRRCCSSADICPKCWTLMTMAIRIIDRALKEDFGFKHRLWVYSGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHL---SEKIHPFIRKSINIIKKYFEEYALVNQDILENKESWDKILALVPETIHDELQQSFQKSHNSL-QRWEHLKKVASRYQ------NNIKNDKYGPWLEWEIMLQYCFPRLDINVSKGINHLLKSPFSVHPKTGRISVPIDLQKVDQFDPFTVPTISFICRELDAISTNEEEKEENEAESDVKHRTRDYKKTSLAPYVKVFEHFLENLDKSRKGE 409

The following BLAST results are available for this feature:

BLAST of TCONS_00002838-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002838-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PRI1	1.951e-136	48.54	DNA primase small subunit OS=Homo sapiens GN=PRIM1...	[more]

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TCONS_00002838-protein (polypeptide) - C. hemisphaerica