TCONS_00002882-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002882-protein
Unique NameTCONS_00002882-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length176

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002882-protein ID=TCONS_00002882-protein|Name=TCONS_00002882-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MADEKKDKANPMKEIRIQKLCLNICVGESGDRLVRAGKVLEALTGQTPVF
SKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVKEYELRRRNFS
ETGNFGFGIAEHIDLGIKYDPSIGIYGMDFYVVLARPGYNVAYRRRKKAK
VGFPHRIRKADSMKWFQHKYDGILMK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001565XLOC_001565Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002882TCONS_00002882Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022803Ribosomal_L5_domain
IPR031310Ribosomal_L5_N
IPR002132Ribosomal_L5
IPR031309Ribosomal_L5_C
IPR020929Ribosomal_L5_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022803Ribosomal protein L5 domainGENE3D3.30.1440.10coord: 2..176
e-value: 1.1E-79
score: 265.7
IPR022803Ribosomal protein L5 domainSUPERFAMILY55282RL5-likecoord: 10..173
IPR031310Ribosomal protein L5, N-terminalPFAMPF00281Ribosomal_L5coord: 10..63
e-value: 2.9E-20
score: 72.2
IPR002132Ribosomal protein L5PIRSFPIRSF002161RPL5p_RPL5a_RPL11e_RPL5ocoord: 1..172
e-value: 1.9E-40
score: 136.2
IPR031309Ribosomal protein L5, C-terminalPFAMPF00673Ribosomal_L5_Ccoord: 67..142
e-value: 4.6E-21
score: 74.7
IPR020929Ribosomal protein L5, conserved sitePROSITEPS00358RIBOSOMAL_L5coord: 40..56

Blast
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BLAST of TCONS_00002882-protein vs. Swiss-Prot (Human)
Match: RL11 (60S ribosomal protein L11 OS=Homo sapiens GN=RPL11 PE=1 SV=2)

HSP 1 Score: 292.738 bits (748), Expect = 8.783e-103
Identity = 135/175 (77.14%), Postives = 157/175 (89.71%), Query Frame = 0 
Query:    1 MADEKKDKANPMKEIRIQKLCLNICVGESGDRLVRAGKVLEALTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVKEYELRRRNFSETGNFGFGIAEHIDLGIKYDPSIGIYGMDFYVVLARPGYNVAYRRRKKAKVGFPHRIRKADSMKWFQHKYDGILM 175
            MA ++ +K NPM+E+RI+KLCLNICVGESGDRL RA KVLE LTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKV+EYELR+ NFS+TGNFGFGI EHIDLGIKYDPSIGIYG+DFYVVL RPG+++A ++R+   +G  HRI K ++M+WFQ KYDGI++
Sbjct:    1 MAQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFSDTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIIL 175
The following BLAST results are available for this feature:
BLAST of TCONS_00002882-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL118.783e-10377.1460S ribosomal protein L11 OS=Homo sapiens GN=RPL11... [more]
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