TCONS_00002883-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002883-protein
Unique NameTCONS_00002883-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length142

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002883-protein ID=TCONS_00002883-protein|Name=TCONS_00002883-protein|organism=Clytia hemisphaerica|type=polypeptide|length=142bp
MPRLGRRESEDMQRLFDTFDCDMNGRISRRELKAVFKALNVTINDENLRS
MFHSADKDKSGFIEFGEFVRVFSPPSQDELLNAFKRFDKNGDGFLTPDEV
KEVLRDANQPATDRNVTEMIESVDSNGDGKINYKEFLTMLKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001566XLOC_001566Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002883TCONS_00002883Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainSMARTSM00054efh_1coord: 47..75
e-value: 0.013
score: 24.7
coord: 79..107
e-value: 5.2E-5
score: 32.6
coord: 11..39
e-value: 0.012
score: 24.8
coord: 115..142
e-value: 0.12
score: 21.5
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 79..140
e-value: 8.9E-15
score: 54.8
coord: 10..72
e-value: 6.6E-11
score: 42.4
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 7..42
score: 12.505
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 75..110
score: 14.988
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 43..73
score: 9.492
IPR002048EF-hand domainPROSITEPS50222EF_HAND_2coord: 111..142
score: 10.608
IPR002048EF-hand domainCDDcd00051EFhcoord: 11..73
e-value: 1.45015E-12
score: 57.9429
IPR002048EF-hand domainCDDcd00051EFhcoord: 79..141
e-value: 1.14507E-16
score: 69.1137
NoneNo IPR availableGENE3D1.10.238.10coord: 6..37
e-value: 5.9E-7
score: 28.5
NoneNo IPR availableGENE3D1.10.238.10coord: 61..92
e-value: 1.4E-15
score: 56.4
NoneNo IPR availableGENE3D1.10.238.10coord: 38..60
e-value: 9.3E-13
score: 47.6
NoneNo IPR availableGENE3D1.10.238.10coord: 93..140
e-value: 6.0E-21
score: 73.9
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 20..32
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 88..100
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 124..136
IPR011992EF-hand domain pairSUPERFAMILY47473EF-handcoord: 4..141

Blast
[Close]
BLAST of TCONS_00002883-protein vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.948e-24
Identity = 46/145 (31.72%), Postives = 84/145 (57.93%), Query Frame = 0 
Query:    3 RLGRRESEDMQRLFDTFDCDMNGRISRRELKAVFKALNVTINDENLRSMFHSADKDKSGFIEFGEFVRVFS-----PPSQDELLNAFKRFDKNGDGFLTPDEVKEVLRDANQPATDRNVTEMIESVDSNGDGKINYKEFLTMLKS 142
            +L   +  + +  F  FD D +G I+ +EL  V ++L     +  L+ M +  D D +G I+F EF+ + +       S++E+  AF+ FDK+G+G+++  E++ V+ +  +  TD  V EMI   D +GDG++NY+EF+ M+ +
Sbjct:    4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148
The following BLAST results are available for this feature:
BLAST of TCONS_00002883-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM32.948e-2431.72Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
back to top