TCONS_00002892-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002892-protein
Unique Name	TCONS_00002892-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	522

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002892-protein ID=TCONS_00002892-protein|Name=TCONS_00002892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp
MLSRKCSSLSIVGFICCMVIIGYAFLTLQETQKLNEIKDHEIIKSRDHES
VLKEQLKVVYHHAQKVEEELKKERERHRKTRIEFLEAKKEFYSNLTKSKH
EAWTRFKALDSDHKMLKAEHEETKISYTSLQAQYKRLSADHQRIVKQSKD
EYNTLKDNKDRESTSLQDRVQELYRKNLYYQEAAEKHRTYGKQMKEHYEN
CTILAEQLKKRLDTKYVSLKKKDSILPTNELKATQSTTEKSSNNVMLQPK
TDNPANTKSTENVGDDDQNVNIGNHRYAGKAEDSEIANNHRYGNLKSNNK
MKGDAGQNPALKDVTSKTVTDTTSSPPKESQFQNNLIGKDKNQKQEMFHQ
KDVQHPQLELPGGKPHDSDVENQVKNPHVQLELPGGENLNDNALDRQRKD
TGGQIELPGKDNQDNLLVQRRNSNGQVELPGNNAQDLIKQRQNLNVARQQ
DETQQNERLDVKKVTMEDDENGDQNLDKDGGGGAGVEGAGEQKETGNEND
PPIKLDEDETEDKMVDEDEEKK

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001571	XLOC_001571	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002892	TCONS_00002892	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 60..90
None	No IPR available	COILS	Coil	Coil	coord: 156..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..336
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 446..522

Blast

[Close]

BLAST of TCONS_00002892-protein vs. Swiss-Prot (Human)
Match: GOLI4 (Golgi integral membrane protein 4 OS=Homo sapiens GN=GOLIM4 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.886e-20
Identity = 80/315 (25.40%), Postives = 155/315 (49.21%), Query Frame = 0

Query:    1 MLSRKCSSLSIVGFICCMVIIGYAFLTLQETQKLNEIKDHEII--KSRDHESVLKEQLKVVYHHAQKVEEELKKERERHRKTRIEFLEAKKEFYSNLTKSKHEAWTRFKALDSDHKMLKAEHEETKISYTSLQAQYKRLSADHQRIVKQSKDEYNTLKDNKDRESTSLQDRVQELYRKNLYYQEAAEKHRTYGKQMKEHYENCTILAEQLKKRLD-------------TKYVSLKKKDSILPTNELKATQSTTEKSSNNVMLQPKTDNPANTKSTENVGDDDQNVNIGNHRYA--GKAEDSEI-ANNHRYGNLKS 297
            M SRK   +     +   V+ G+ +  +   +   +++  E +  K + H+  L  QL+VVY H  ++E+ L+KER  H+K + +FL  K E    L K + ++ +R+ AL+  H+MLK++HEE K  ++ L+ ++++   D  R     K +Y  L+  K++E + L++ V  L  +N   ++A +   T  + +K+ ++N     EQL   L+              +Y  LK   + +P+  L+      +++   V   P+  N A  K T  V +  +N ++  +  A  G+AED+++ A  H+    ++
Sbjct:    5 MCSRKQKRI-FQTLLLLTVVFGFLYGAMLYYELQTQLRKAEAVALKYQQHQESLSAQLQVVYEHRSRLEKSLQKERLEHKKAKEDFLVYKLEAQETLNKGRQDSNSRYSALNVQHQMLKSQHEELKKQHSDLEEEHRKQGEDFSRTFNDHKQKYLQLQQEKEQELSKLKETVYNLREENRQLRKAHQDIHTQLQDVKQQHKNLLSEHEQLVVTLEDHKSALAAAQTQVAEYKQLKDTLNRIPS--LRKPDPAEQQNVTQVAHSPQGYNTAREKPTREVQEVSRNNDVWQNHEAVPGRAEDTKLYAPTHKEAEFQA 316

The following BLAST results are available for this feature:

BLAST of TCONS_00002892-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002892-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GOLI4	2.886e-20	25.40	Golgi integral membrane protein 4 OS=Homo sapiens ...	[more]

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TCONS_00002892-protein (polypeptide) - C. hemisphaerica