TCONS_00002901-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002901-protein
Unique NameTCONS_00002901-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length212

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002901-protein ID=TCONS_00002901-protein|Name=TCONS_00002901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
MSNRYARPPNTSLYIRNLGTSTRPEDLRRIFAKYGPIRDVYIPLDYYSRE
PRGFAYVQYEDIRDAEDALHYENHVRCQGRELDVQFAEGDRKTPGQMRTR
DGDDDRYGGGYRGGGRRRSRSRSPPRRRRRSPSRSRSRSRSRGRRRSPSR
SPRRSKSRSRSRSPRKRSRSHSPRKVSRSRSKSRSRSRSRSPSRSRSRSK
SRSPRKSRSRSP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001574XLOC_001574Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002901TCONS_00002901Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 12..85
e-value: 5.6E-21
score: 85.7
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 13..82
e-value: 1.1E-16
score: 60.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 11..89
score: 17.353
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 7..118
NoneNo IPR availableGENE3D3.30.70.330coord: 1..108
e-value: 1.6E-25
score: 89.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..212

Blast
[Close]
BLAST of TCONS_00002901-protein vs. Swiss-Prot (Human)
Match: SRS12 (Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 8.111e-51
Identity = 115/230 (50.00%), Postives = 148/230 (64.35%), Query Frame = 0 
Query:    4 RYARPPNTSLYIRNLGTSTRPEDLRRIFAKYGPIRDVYIPLDYYSREPRGFAYVQYEDIRDAEDALHYENHVRCQGRELDVQFAEGDRKTPGQMRTRD----------------GDDDRYGGGYRGGGRRRSRSRSPPRRRRRSPSRSRSRSRSRGRRRS---PSRSPRR---SKSRSRSRSPRKRSR------SHSPRKVSRSRSKSRSRSRSRSPSRSRSRSKSRSPR 205
            RY RPPNTSL+IRN+  +TRPEDLRR F +YGPI DVYIPLD+Y+R PRGFAYVQ+ED+RDAEDAL+  N     GR++++QFA+GDRKTPGQM++++                    R      G  RRRS S    R RR S S+S+SRS+S  RR +    SR+PRR   S+ RSRS+S +KRS+      S SP+K + S +KSRS  R    S S +RS  +SP+
Sbjct:    3 RYTRPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPGQMKSKERHPCSPSDHRRSRSPSQRRTRSRSSSWGRNRRRSDSLKESRHRRFSYSQSKSRSKSLPRRSTSARQSRTPRRNFGSRGRSRSKSLQKRSKSIGKSQSSSPQKQTSSGTKSRSHGRH---SDSIARSPCKSPK 229
The following BLAST results are available for this feature:
BLAST of TCONS_00002901-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRS128.111e-5150.00Serine/arginine-rich splicing factor 12 OS=Homo sa... [more]
back to top