TCONS_00002969-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002969-protein
Unique Name	TCONS_00002969-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	599

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002969-protein ID=TCONS_00002969-protein|Name=TCONS_00002969-protein|organism=Clytia hemisphaerica|type=polypeptide|length=599bp
MDLDPHVHHTTVKLEEMPHAVPVHQVTRSNSLSMTHVGSMSDGLSDDPSS
PESTAFDDTDLLTAPSVGMHDDVTDEVTAQLAAAGPIGMAAAAAIITGKR
RKKSYHFETNPSIRKRQATRLLRKLKQLLTEYTTRVGQQACIVVCCPGKL
GASFKCFGAAPLENIVKNRKNIIMEDLENALAQQAPSIPDTNPDLHELPP
LVIEGIPTPVDKMTQAQLRAFIPIMLKYSTGRGKPGWGRDNTKPPWWPEE
VPWANVRSDVRNEMDKQKISWTNALRKVVRNCYRYHGREELLDAFASADN
QMEQHNTQQTQVFTSQYPHLVHTINNADGTVSIIQVDATGAVTTLSESAS
QSEATQAVATLAEVAASQGEVIYGSHSMDHHSTLTHDHGGVVTSISESAL
HDGQLLLGDAVSAAAALVGVQDQNTAVVSIPVHAAAAMMQIQGTNLIPVS
IANGGGGVQFIATSSLSNFQLQAANEQQTNAQQTVTQNRQPPSLSAQPSE
DNLASMDVPMTDPSPPVSPSPPLVQEQHSANELGVHQHSTNEMTVHQNST
NEMVVHQNSTNEMTIHQQQPPNEISVPMATQAVEVATMHDQQTNSVTGT

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001631	XLOC_001631	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002969	TCONS_00002969	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR019525	Nrf1_NLS/DNA-bd_dimer

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 288..308
None	No IPR available	COILS	Coil	Coil	coord: 115..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..59
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 473..525
IPR019525	Nuclear respiratory factor 1, NLS/DNA-binding, dimerisation domain	PFAM	PF10491	Nrf1_DNA-bind	coord: 85..295 e-value: 2.7E-105 score: 350.7

Blast

[Close]

BLAST of TCONS_00002969-protein vs. Swiss-Prot (Human)
Match: NRF1 (Nuclear respiratory factor 1 OS=Homo sapiens GN=NRF1 PE=1 SV=1)

HSP 1 Score: 344.739 bits (883), Expect = 2.830e-112
Identity = 224/468 (47.86%), Postives = 282/468 (60.26%), Query Frame = 0

Query:   39 SMSDGLSDDPSSPESTAFDDTDLLTAPSVGMHDDVTDEVTAQLAAAGPIGMAAAAAIITGKRRKKSYHFETNPSIRKRQATRLLRKLKQLLTEYTTRVGQQACIVVCCPGKLGASFKCFGAAPLENIVKNRKNIIMEDLENALAQQAPSIPDTNPDLHELPPLVIEGIPTPVDKMTQAQLRAFIPIMLKYSTGRGKPGWGRDNTKPPWWPEEVPWANVRSDVRNEMDKQKISWTNALRKVVRNCYRYHGREELLDAFASADNQMEQHNTQQTQVFTSQYPHL------VHTINNADGTVSIIQVDATGAVTTLSESASQSEATQAVATLAEVAASQGEV------IYGSHSMDHHSTLTHD--------------------HGGVVT-------------SISESALH-DGQLLL-GDAVSAAAALVGVQDQNTAVVSIPVHAAAAMMQIQGTNLIPVSIANGGGGVQ 459
            SM     D PSSPE T++DD+D+L + +        DEVTA LAAAGP+GMAAAAA+ TGK+RK+ + FE+NPSIRKRQ TRLLRKL+  L EYTTRVGQQA ++   P K    FK FGAAPLEN+V+  K++I+EDLE+ALA+ AP+  + N    ELPPL I+GIP  VDKMTQAQLRAFIP MLKYSTGRGKPGWG+++ KP WWPE++PWANVRSDVR E  KQ++SWT ALR +V+NCY+ HGRE+LL AF       E   TQ     T    HL      V T +N DGTVS+IQV     V TL++ AS+   T  VA +   A + GEV      + G   M   +T   +                     G  VT             +++E+ L   GQ++L G+  +A  AL GVQD N  +V IPV    +M Q      +  S+A G G VQ
Sbjct:   36 SMLSADEDSPSSPEDTSYDDSDILNSTAA-------DEVTAHLAAAGPVGMAAAAAVATGKKRKRPHVFESNPSIRKRQQTRLLRKLRATLDEYTTRVGQQAIVLCISPSKPNPVFKVFGAAPLENVVRKYKSMILEDLESALAEHAPAPQEVN---SELPPLTIDGIPVSVDKMTQAQLRAFIPEMLKYSTGRGKPGWGKESCKPIWWPEDIPWANVRSDVRTEEQKQRVSWTQALRTIVKNCYKQHGREDLLYAF-------EDQQTQTQATATHSIAHLVPSQTVVQTFSNPDGTVSLIQVGTGATVATLAD-ASELPTTVTVAQVNYSAVADGEVEQNWATLQGGE-MTIQTTQASEATQAVASLAEAAVAASQEMQQGATVTMALNSEAAAHAVATLAEATLQGGGQIVLSGETAAAVGALTGVQDAN-GLVQIPV----SMYQT-----VVTSLAQGNGPVQ 474

The following BLAST results are available for this feature:

BLAST of TCONS_00002969-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002969-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NRF1	2.830e-112	47.86	Nuclear respiratory factor 1 OS=Homo sapiens GN=NR...	[more]

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TCONS_00002969-protein (polypeptide) - C. hemisphaerica