TCONS_00003002-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003002-protein
Unique NameTCONS_00003002-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length638

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003002-protein ID=TCONS_00003002-protein|Name=TCONS_00003002-protein|organism=Clytia hemisphaerica|type=polypeptide|length=638bp
MVDEEKIALRDLDKKDVDNEELDEREQWGHKLDFILSCVGYAVGFGNVWR
FPNLCFENGGGAFLIPYFLFLALCGMPLFFMELSISQYIGLGPIACWKAV
SPIFQGVGYSMLIISFLVSIYYNTIIAWVLYYLFESFRSDVPWRDCQNGW
NSEQCYEGPPSNQLIEPTNSTINGTTILSCPKYFVKMFNGSAVVNATQSS
LFDMCQFQRPEIRILPAEEFLENYVFEQTKGVDQPGEVKWELALCLLLAW
IIVYFCIWKGVKSVGKVVYFTATFPYVVLLILLIRGATLSGSMKGITFYL
KPDFNKLADPGVWVRAAGQIFYSLGVGFGSLIAMGSYNKFNNNCYKDAVM
VSCINCGTSVLCGFVVFSLLGHMADILQLPIEDVAKSGPGLAFIVYPAGI
AQMPVSTLWAILFFLMLITLGLDSQFAFIEVVLSSLTDEYPRYLRRYKEL
ATLVMCAIAFLLGIPTVLQAGAYIVEIFNTQAGGLSLLFLAFFESLAIGW
IYGADRLLDNVETMIGYKPSRWWLLCWKYFAPIIILVTFLYGIADWGGIK
FGKEYVYPGWAEGVGWLLAFSSMVTIPIGMAHTLYKAHKTSSYSVSGGSS
SFRETLRIAFSPNEERIQEIEQARMEKANTALLGNEKA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001643XLOC_001643Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003002TCONS_00003002Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000175Na/ntran_symport
Vocabulary: Molecular Function
TermDefinition
GO:0005328neurotransmitter:sodium symporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0006836neurotransmitter transport
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006836 neurotransmitter transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005328 neurotransmitter:sodium symporter activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000175Sodium:neurotransmitter symporterPRINTSPR00176NANEUSMPORTcoord: 403..422
score: 63.69
coord: 62..81
score: 59.26
coord: 484..504
score: 46.37
coord: 524..544
score: 27.17
coord: 106..132
score: 46.75
coord: 33..54
score: 66.99
coord: 267..284
score: 70.22
coord: 349..369
score: 46.06
IPR000175Sodium:neurotransmitter symporterPFAMPF00209SNFcoord: 25..585
e-value: 3.6E-204
score: 679.2
IPR000175Sodium:neurotransmitter symporterPROSITEPS50267NA_NEUROTRAN_SYMP_3coord: 24..589
score: 106.677
NoneNo IPR availableSUPERFAMILY161070SNF-likecoord: 25..155
coord: 215..585

Blast
[Close]
BLAST of TCONS_00003002-protein vs. Swiss-Prot (Human)
Match: SC6A1 (Sodium- and chloride-dependent GABA transporter 1 OS=Homo sapiens GN=SLC6A1 PE=1 SV=2)

HSP 1 Score: 558.14 bits (1437), Expect = 0.000e+0
Identity = 274/630 (43.49%), Postives = 396/630 (62.86%), Query Frame = 0 
Query:    3 DEEKIALRDLDKKDVDNEELDEREQWGHKLDFILSCVGYAVGFGNVWRFPNLCFENGGGAFLIPYFLFLALCGMPLFFMELSISQYIGLGPIACWKAVSPIFQGVGYSMLIISFLVSIYYNTIIAWVLYYLFESFRSDVPWRDCQNGWNSEQCYEGPPSNQLIEPTNSTINGTTILSCPKYFVKMFNGSAVVNATQSSLFDMCQFQRPEIRILPAEEFLENYVFEQTKGVDQPGEVKWELALCLLLAWIIVYFCIWKGVKSVGKVVYFTATFPYVVLLILLIRGATLSGSMKGITFYLKPDFNKLADPGVWVRAAGQIFYSLGVGFGSLIAMGSYNKFNNNCYKDAVMVSCINCGTSVLCGFVVFSLLGHMADILQLPIEDVAKSGPGLAFIVYPAGIAQMPVSTLWAILFFLMLITLGLDSQFAFIEVVLSSLTDEYPRYLRRYKELATLVMCAIAFLLGIPTVLQAGAYIVEIFN-TQAGGLSLLFLAFFESLAIGWIYGADRLLDNVETMIGYKPSRWWLLCWKYFAPIIILVTFLYGIADWGGIKFGKEYVYPGWAEGVGWLLAFSSMVTIPIGMAHTLYKAHKTSSYSVSGGSSSFRETLRIAFSPNEERIQEIEQARMEKANTA 631
            D+ K  +  + KK  D   L +R+ W  + DF++SCVGYA+G GNVWRFP LC +NGGGAFLIPYFL L   G+PLF +E S+ QY  +G +  WK ++P+F+GVG +  ++SF ++IYY  II+W +YYL+ SF + +PW+ C N WN+++C+    +  ++  TN T                   SAVV                        EF E  + + T G+D+PG+++W LA+ L +AWI+VYFCIWKGV   GKVVYF+AT+PY++L+IL  RG TL G+ +GI FY+ P+F KL+D  VW+ AA QIF+S G+G GSLIA+GSYN F+NN Y+D+++V CIN  TS+  GFV+FS++G MA + +  I DVA SGPGLAF+ YP  + Q+P+S LWAILFF ML+ LG+DSQF  +E  +++L DEYPR LR  +EL    +C I++L+G+  + Q G Y+ ++F+   A G+SLLFL FFE ++I W YG +R  DN++ M+G +P  WW LCW +F PII+   F++       +  G  YV+P W +GVGWL+A SSMV IP  MA+                  S ++ +++   P+E+ ++        +A ++
Sbjct:   25 DKPKTLVVKVQKKAAD---LPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWK-LAPMFKGVGLAAAVLSFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFS---NYSMVNTTNMT-------------------SAVV------------------------EFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIISYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVFIFSAVQMTPLTMG-NYVFPKWGQGVGWLMALSSMVLIPGYMAYMFLTLK-----------GSLKQRIQVMVQPSEDIVRPENGPEQPQAGSS 592
The following BLAST results are available for this feature:
BLAST of TCONS_00003002-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SC6A10.000e+043.49Sodium- and chloride-dependent GABA transporter 1 ... [more]
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