TCONS_00003221-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00003221-protein
Unique Name	TCONS_00003221-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	386

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00003221-protein ID=TCONS_00003221-protein|Name=TCONS_00003221-protein|organism=Clytia hemisphaerica|type=polypeptide|length=386bp
DIKISLFRKLKIEIKNKMFTGSHKQKIERQKALAEVDKANEKAIISQLPD
VILVHIFQYLDTLTLVSASLVCRRWYHVCGDNALTTTFDMRTSPRSLKQL
WMISRRKLTKNTVAVHIRGKSNFNKTMENLTEAYLEDLFKRCDQLTSLSF
ECFDFTKVPLANIVHPQSEGLIHLSLRESMLPMKWFEGLEHGNLLPNLQT
LDLHTCSKVANNDLQAISYLKSLERLVLCNCYRISARGIPTLVTNLRSLK
HLDFSGCPGINNVALFHLAKLELTELLLRFCHLLTDYGINELFRDTSCTK
KTLRKLDLYSCHELTDKCFENVIKGNQLTDLNVGGCNKLTREKVDCFKEL
FPECVLQSGPVNSDDDQCDKDENDFHACKRMRISAH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001781	XLOC_001781	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00003221	TCONS_00003221	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006553	Leu-rich_rpt_Cys-con_subtyp
IPR001810	F-box_dom
IPR032675	L_dom-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 22..42
None	No IPR available	GENE3D	1.20.1280.50		coord: 32..134 e-value: 2.7E-16 score: 59.1
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 131..347
IPR006553	Leucine-rich repeat, cysteine-containing subtype	SMART	SM00367	LRR_CC_2	coord: 195..220 e-value: 13.0 score: 13.8 coord: 272..295 e-value: 120.0 score: 6.2 coord: 221..245 e-value: 35.0 score: 10.3 coord: 300..325 e-value: 13.0 score: 13.6 coord: 246..271 e-value: 0.0045 score: 26.2
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 48..88 e-value: 2.1E-6 score: 37.3
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 45..82 e-value: 9.5E-13 score: 47.7
IPR001810	F-box domain	PROSITE	PS50181	FBOX	coord: 42..88 score: 12.173
IPR001810	F-box domain	SUPERFAMILY	81383	F-box domain	coord: 41..106
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 279..379 e-value: 6.2E-7 score: 28.0
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 135..278 e-value: 3.1E-15 score: 55.3

Blast

[Close]

BLAST of TCONS_00003221-protein vs. Swiss-Prot (Human)
Match: FBXL7 (F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL7 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.291e-18
Identity = 87/324 (26.85%), Postives = 151/324 (46.60%), Query Frame = 0

Query:   41 EKAIISQLPDVILVHIFQYLDTLTLVSASLVCRRWYHVCGDNALTTTFDMRTSPRSLKQLWMISRRKLTKNTVAVHIRGKSNFNKTMENLTEAYLEDLFKRCDQLTSLSFE-CFDFTKVPLANIVH--PQSEGL----------IHLSLRESMLPMKWFEGLEHGNLLPNLQTLDLHTCSKVANNDLQAI-SYLKSLERLVLCNCYRISARGIPTLVTNLRSLKHLDFSGCPGINNVALFHLAKLE--LTELLLRFCHLLTDYGINELFRDTSCTKKTLRKLDLYSCHELTDKCFENVIKG-NQLTDLNVGGCNKLTREKVDCF 347
            E+A I +LPD  +V IF +L T  L   + VCRRWY++  D  L  T  +     ++ +   +  R+L ++T  V +  ++        LT+  L  + + C +L  L    C++ +   + ++V   P  E L          I L+ RE+ + +       HG  + +++ LD+  C  + +  L  I ++   L  L L  C R++  G+  LV    S+K L  S C  +++  L  +AKLE  L  L +  C  +TD GI  + +   C+K  LR L+   C  +TD   E + K   +L  L++G C  ++   ++C 
Sbjct:  110 EQASIDRLPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTIRLTGETINVDRALKVLTRRLCQDTPNVCLMLETVTVSGCRRLTDRGLYTIAQCCPELRRLEVSGCYNISNEAVFDVVSLCPNLEHLDVSGCSKVTCISLT-REASIKLSPL----HGKQI-SIRYLDMTDCFVLEDEGLHTIAAHCTQLTHLYLRRCVRLTDEGLRYLVIYCASIKELSVSDCRFVSDFGLREIAKLESRLRYLSIAHCGRVTDVGIRYVAK--YCSK--LRYLNARGCEGITDHGVEYLAKNCTKLKSLDIGKCPLVSDTGLECL 423

The following BLAST results are available for this feature:

BLAST of TCONS_00003221-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00003221-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
FBXL7	4.291e-18	26.85	F-box/LRR-repeat protein 7 OS=Homo sapiens GN=FBXL...	[more]

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TCONS_00003221-protein (polypeptide) - C. hemisphaerica