TCONS_00003271-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003271-protein
Unique NameTCONS_00003271-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length204

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003271-protein ID=TCONS_00003271-protein|Name=TCONS_00003271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MGADDPLEPFVDIIRTQDTQKRIKLAAQIKPVLTSLHNYKGIAGNYIIDG
LVAWISSGNFKVSQMGLELVGILAYNMNVNFKPQVPSVIPPVVDRLGDAK
KIVREQALELLSILMDPVSSPQFVFDNLNQYYNHKNWRVREVLMICLAST
IQRFSATSLQISKITPELVKLLQDPTGQVRDTAFTTVIEIYKHVGDRFRH
DLAR
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001822XLOC_001822Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003271TCONS_00003271Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR034085TOG
IPR011989ARM-like
IPR024395CLASP_N_dom
IPR021133HEAT_type_2
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR034085TOG domainSMARTSM01349TOG_3coord: 1..204
e-value: 4.2E-25
score: 99.4
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 110..203
e-value: 1.5E-12
score: 46.1
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 7..109
e-value: 1.3E-7
score: 30.1
IPR024395CLASP N-terminal domainPFAMPF12348CLASP_Ncoord: 61..202
e-value: 5.2E-17
score: 62.1
IPR021133HEAT, type 2PROSITEPS50077HEAT_REPEATcoord: 164..202
score: 8.972
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 5..196

Blast
[Close]
BLAST of TCONS_00003271-protein vs. Swiss-Prot (Human)
Match: CLAP1 (CLIP-associating protein 1 OS=Homo sapiens GN=CLASP1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.751e-42
Identity = 68/161 (42.24%), Postives = 108/161 (67.08%), Query Frame = 0 
Query:   45 NYIIDGLV-AWISSGNFKVSQMGLELVGILAYNMNVNFKPQVPSVIPPVVDRLGDAKKIVREQALELLSILMDPVSSPQFVFDNLNQYYNHKNWRVREVLMICLASTIQRFSATSLQISKITPELVKLLQDPTGQVRDTAFTTVIEIYKHVGDRFRHDLAR 204
            + ++DGL  +W++S N+KV  +G++++  L   +   FK Q+ +V+P ++DRLGDAK  VREQ   LL  +MD  ++PQ+V+D +   + HKN+R RE + +CL +T+    A +L +SKI P +  LL DP  QVRD A  +++EIY+HVG+R R DL++
Sbjct:   48 DKLVDGLATSWVNSSNYKVVLLGMDILSALVTRLQDRFKAQIGTVLPSLIDRLGDAKDSVREQDQTLLLKIMDQAANPQYVWDRMLGGFKHKNFRTREGICLCLIATLNASGAQTLTLSKIVPHICNLLGDPNSQVRDAAINSLVEIYRHVGERVRADLSK 208
The following BLAST results are available for this feature:
BLAST of TCONS_00003271-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLAP17.751e-4242.24CLIP-associating protein 1 OS=Homo sapiens GN=CLAS... [more]
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