TCONS_00003273-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00003273-protein
Unique Name	TCONS_00003273-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1212

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00003273-protein ID=TCONS_00003273-protein|Name=TCONS_00003273-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1212bp
RLNNIFDKFDQLQRSGNMVAQDTEADGAVPTPIRKKSAKGGANVRRSTSF
SAGDKKKRQLSVERSLSSSGGSSAAASGAVDETDFTSLWEEVTDARVFSP
KEYMTEFDRIRLILENGNNDWEKRVEALKELRTYVKIHTTIDNSIKVLKN
LEDALKTSVKDLRSAVVREVCVTISYMSSILRNKFDYLAENLFPQLIILI
PNSVKVMSSSAHATIRLIIKHTHSPRLVPIIISNLLTSKSRDIRRKCGEY
LALFLETWDTSALKNHVSLIEEGLRKGISDADSEARAAVRRAFWNFADHY
KSRADSLMQTFDSSKQKLLNSDRNLLTAGGGGGGGGGSTKNGGFARPTMP
GRSKSNLAKRSGSSSSSNGLKGPSRGDVFSTPSIGQRSASQLEARRPTPS
MTPRQKSYDDLKRHQVKSRTLPRERVSRTPQRSAASQPSSRTSSPKRMVG
MPTYSRERSEDYMKTYSVNKTRIPTPQSARTSSRHGSRSASRSNSRQSSR
DPSPTRPEIPGQNSTRSRNGQDFTEDAIWDALKKTKPQGRDRYNSHGSIN
GIGSDESDNSSISSRESNKHRHISHDFHEILHMLQQDASNTKRDGLTSFQ
GLLQSSMRYLNTEEAVRVKETFNRYFAEPNSKIYSSFLDVLSEFLVQYKN
DLQDWLFILLTRLLQRLSTDILQSSQTKIARVLDVVRDSYPYDHQFQIIT
KYITDKTQTPSLNMKLSLLQYTRGLIALMDANDFTNSAITRLAITRVITW
MSEPKSADVRKESANVIVALFQLNPSEFSMVLSSLPNSIQEGATRAINIE
IKNPNGTGSVSTPPYASTNHMRAQSQTVPSKQEHMEKPIYRTASPAKHAS
RIQMRDEYATGSPVTRTPLSTNSRQDTYGESASTHERLPIANKLSYSSPQ
ESAVPNHVKATPETPYAYNTHYNSENSPMWLSTTKDMSQYNPKSYEDSLI
ESTRNLSFTSPVNRIADGAEQPDETDDGLNSSMNLLNEISTILSQHHRGI
DSEDIKSALIELLKTMRSATNNPMLGQKLQGLLPSVMVMLKHSEATVRCL
AIRCLREICQSHPNIYRSDLQSFLMPLLETESDNTKEVSKTAEECCNLIS
QTIPADELLPIIAPVCGSSNFPTNSSAIKMLNMVSDSCESSVMKKHIETV
VPNLLKAYDHTESMVRKAACFCLVSVHNVAGPDLVQPYFQNLAGSKIKLL
NLYIRRSQTSNV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001823	XLOC_001823	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00003273	TCONS_00003273	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR034085	TOG
IPR011989	ARM-like
IPR000357	HEAT
IPR024395	CLASP_N_dom
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR034085	TOG domain	SMART	SM01349	TOG_3	coord: 971..1212 e-value: 2.2E-13 score: 60.5 coord: 102..332 e-value: 2.1E-15 score: 67.2
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 574..1201 e-value: 2.6E-35 score: 121.6
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 97..303 e-value: 4.0E-12 score: 45.0
IPR000357	HEAT repeat	PFAM	PF02985	HEAT	coord: 1032..1061 e-value: 6.3E-4 score: 19.7
IPR024395	CLASP N-terminal domain	PFAM	PF12348	CLASP_N	coord: 109..319 e-value: 2.4E-39 score: 135.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 801..834
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 323..569
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 856..883
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 575..788 coord: 975..1208 coord: 109..302

Blast

[Close]

BLAST of TCONS_00003273-protein vs. Swiss-Prot (Human)
Match: CLAP1 (CLIP-associating protein 1 OS=Homo sapiens GN=CLASP1 PE=1 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 4.728e-70
Identity = 161/413 (38.98%), Postives = 240/413 (58.11%), Query Frame = 0

Query:  424 ERVSRTPQRSAASQPSSRTSSPKRMVGMPTYSRERSEDYMKTYSVNKTRIPTPQSARTSSRHGSRSASRSNSRQSSRDPSPTRP-------------EIPGQ-NSTRSRNGQDFTEDAIWDALKKTKPQGRDRYNSHGSINGIGSDESDNSSISSRESNKHRH--ISH------DFHEILHMLQQDASNTKRDGLTSFQGLLQSSMRYLNTEEAVRVKETFNRYFAEPNSK-IYSSFLDVLSEFLVQYKNDLQDWLFILLTRLLQRLSTDILQSSQTKIARVLDVVRDSYPYDHQFQIITKYITDKTQTPSLNMKLSLLQYTRGLIALMDANDFTNSAITRLAITRVITWMSEPKSADVRKESANVIVALFQLNPSEFSMVLSSLPNSIQEGATRAINIEIKNPNGTGSVSTP 813
            E+ S+ P+    SQ  SR +SP R +G+                   +RIP P          S+  SR  SR+SSRD SP R               IPG  N+ R  +     E A+ DALKK     R RY  +G  +   ++ SD SS+ S  S   R+  I H      D  E+L+       + +++GL   Q LL+S  R L+  E  R+ E F R FA+P+SK ++S FL+ L +F++ +K+DLQDWLF+LLT+LL+++  D+L S Q K+ + LDV RDS+P+D QF I+ ++I D+TQTP+L +K+++L+Y   L   MD  DF NS+ TRLA++R+ITW +EPKS+DVRK +  V+++LF+LN  EF+M+L +LP + Q+GAT+ ++  +KN + T SV +P
Sbjct:  715 EKRSKIPR----SQGCSRETSPNR-IGL----------------ARSSRIPRPSM--------SQGCSRDTSRESSRDTSPARGFPPLDRFGLGQPGRIPGSVNAMRVLSTSTDLEAAVADALKKPV---RRRYEPYGMYSDDDAN-SDASSVCSERSYGSRNGGIPHYLRQTEDVAEVLNHCASSNWSERKEGLLGLQNLLKS-QRTLSRVELKRLCEIFTRMFADPHSKRVFSMFLETLVDFIIIHKDDLQDWLFVLLTQLLKKMGADLLGSVQAKVQKALDVTRDSFPFDQQFNILMRFIVDQTQTPNLKVKVAILKYIESLARQMDPTDFVNSSETRLAVSRIITWTTEPKSSDVRKAAQIVLISLFELNTPEFTMLLGALPKTFQDGATKLLHNHLKNSSNT-SVGSP 1092

HSP 2 Score: 142.51 bits (358), Expect = 4.844e-34
Identity = 91/270 (33.70%), Postives = 153/270 (56.67%), Query Frame = 0

Query:  940 YNPKSYEDSLIESTRNLSFTSPVNRIADGAEQ-PDETDDGLNSSMNLLNEISTILSQHHRGIDSEDIKSALIELLKTMRSATNNPMLGQKLQGLLPSVMVMLKHSEATVRCLAIRCLREICQSHPNIYRSDLQSFLMPLLETESDNTKEVSKTAEECCNLISQTIPADELLPIIAPVCGSSNFPTNSSAIKMLNMVSDSCESSVMKKHIETVVPNLLKAYDHTESMVRKAACFCLVSVHNVAGPDLVQPYFQNLAGSKIKLLNLYIRRSQ 1208
            YNP  Y D+ I +    +    V    D  EQ  D   D  +   +LL E    LS H+  +  E+ K AL+ELLK  R  +   +  +  + +L  ++  L   + ++R LA+R LREI ++ P  +++  +  +M  LE   D+ KEV + AEE  + ++ +I  ++ + ++ P+  ++++P N +AIKM   V +      + + +  ++P LL+ YD+TES VRKA+ FCLV++++V G DL +P+   L GSK+KLLNLYI+R+Q
Sbjct: 1264 YNPYPYSDA-INTYDKTALKEAV--FDDDMEQLRDVPIDHSDLVADLLKE----LSNHNERV--EERKGALLELLKITREDSLG-VWEEHFKTILLLLLETLGDKDHSIRALALRVLREILRNQPARFKNYAELTIMKTLEAHKDSHKEVVRAAEEAASTLASSIHPEQCIKVLCPIIQTADYPINLAAIKMQTKVVERIAKESLLQLLVDIIPGLLQGYDNTESSVRKASVFCLVAIYSVIGEDL-KPHLAQLTGSKMKLLNLYIKRAQ 1522

The following BLAST results are available for this feature:

BLAST of TCONS_00003273-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00003273-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CLAP1	4.728e-70	38.98	CLIP-associating protein 1 OS=Homo sapiens GN=CLAS...	[more]

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TCONS_00003273-protein (polypeptide) - C. hemisphaerica