TCONS_00003311-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003311-protein
Unique NameTCONS_00003311-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length210

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003311-protein ID=TCONS_00003311-protein|Name=TCONS_00003311-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MCKGNCYRYKCLNRFLTFFNFLLLVLGITIATLPVYIKSHEIVKSWPING
GIIAMGAFIGLIALVGCYGSRRQNQVILFFYMIVLAIVCVITFAFSLAAL
SLSKSQQSQVLSKGWDSISPDTRSDIQKWGECCGFLNSTSIDNPSCSKLD
CFKTGCPSCQDYLAADWFLHFRRSVGGVSLFVSILMCLSIYLTAKYRHIK
NPRANANDYL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001841XLOC_001841Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003311TCONS_00003311Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000301Tetraspanin
IPR018499Tetraspanin/Peripherin
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000301TetraspaninPRINTSPR00259TMFOURcoord: 72..100
score: 17.17
coord: 45..71
score: 26.87
coord: 14..37
score: 21.9
IPR018499Tetraspanin/PeripherinPFAMPF00335Tetraspannincoord: 13..192
e-value: 5.1E-16
score: 59.0

Blast
[Close]
BLAST of TCONS_00003311-protein vs. Swiss-Prot (Human)
Match: TSN31 (Tetraspanin-31 OS=Homo sapiens GN=TSPAN31 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 9.297e-32
Identity = 68/212 (32.08%), Postives = 121/212 (57.08%), Query Frame = 0 
Query:    6 CYRYKCLNRFLTFFNFLLLVLGITIATLPVYIKSHEIVKSWPINGGIIAMGAFIGLIALVGCYGSRRQNQVILFFYMIVLAIVCVITFAFSLAALSLSKSQQSQVLSKGWDSISPDTRSDIQKWGECCGFLNSTSI---DNPSCSKLDCFKTGCPSCQDYLAADWFLHFR----RSVGGVSLFVSILMCLSIYLTAKYRHIKNPRANANDYL 210
            C  + C    L   N + +++ + +  +  + K   +V S  I GG+IA+G F+ LIA+ G  G+   +QV+LFFYMI+L +V +  F  S + L++++S+Q+ V++  W  +S  TR ++++  +CCG  N T++   D   C+ + C K+  P+CQ  +  + FL       + +GGV LF S    L ++L  ++R+ K+PRAN + +L
Sbjct:    3 CGGFACSKNALCALNVVYMLVSLLLIGVAAWGKGLGLVSSIHIIGGVIAVGVFLLLIAVAGLVGAVNHHQVLLFFYMIILGLVFIFQFVISCSCLAINRSKQTDVINASWWVMSNKTRDELERSFDCCGLFNLTTLYQQDYDFCTAI-C-KSQSPTCQ--MCGEKFLKHSDEALKILGGVGLFFSFTEILGVWLAMRFRNQKDPRANPSAFL 210
The following BLAST results are available for this feature:
BLAST of TCONS_00003311-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSN319.297e-3232.08Tetraspanin-31 OS=Homo sapiens GN=TSPAN31 PE=2 SV=... [more]
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