TCONS_00003350-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003350-protein
Unique NameTCONS_00003350-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length423

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003350-protein ID=TCONS_00003350-protein|Name=TCONS_00003350-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MKFMSTSAQHLRMEQRVVEAGRHQLKYFDKLKKEFNLIRSLYLACHGRVQ
AIDELEMCISRLRFPTHYEEMTEGFCEARNDIVRLGEVSQTRYALLSDRV
TASEELKLKNGQMAYLQNLAKVQEDNNGSNPEPCPICVFPLGSEWAVMTC
GHSVCCKCMTTLQKRSNYKRAAIQCPMCRAQSKLTAISIVTAKPAAVKST
DTDRASSDSNDDILDANISVQGNFSTKIEAVVRRILWIQIEQPKAKTLVF
STWTNVLKVISQALSVNNVEFKSLAGAHPKQFERFLTFFKENEICNVLLL
PLHSGAKGLNIIEASHLILTEPALNPSDELQAVGRVHRIGQDKETYVHRF
FVRDTVEEKMYHLFKPKSTQGENTLENELTVDDVVNLIQKTQDEEGDVFA
SDSGDDENTTDGEDEGEDDGYFF
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001853XLOC_001853Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003350TCONS_00003350Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001650Helicase_C
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR018957Znf_C3HC4_RING-type
IPR017907Znf_RING_CS
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0046872 metal ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalSMARTSM00490helicmild6coord: 258..340
e-value: 9.7E-4
score: 28.4
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 232..340
e-value: 5.0E-8
score: 33.2
IPR001650Helicase, C-terminalPROSITEPS51194HELICASE_CTERcoord: 230..382
score: 10.414
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 134..178
e-value: 0.0023
score: 27.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 134..179
score: 11.604
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 134..180
e-value: 1.26699E-7
score: 47.0552
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 118..204
e-value: 2.7E-10
score: 39.0
NoneNo IPR availableGENE3D3.40.50.300coord: 214..378
e-value: 3.7E-22
score: 77.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 392..423
NoneNo IPR availableCDDcd00079HELICccoord: 227..347
e-value: 2.00498E-13
score: 65.722
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 133..182
IPR018957Zinc finger, C3HC4 RING-typePFAMPF00097zf-C3HC4coord: 134..178
e-value: 1.4E-5
score: 24.8
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 150..159
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 218..397
coord: 21..88

Blast
[Close]
BLAST of TCONS_00003350-protein vs. Swiss-Prot (Human)
Match: SHPRH (E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens GN=SHPRH PE=1 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 7.709e-86
Identity = 161/402 (40.05%), Postives = 232/402 (57.71%), Query Frame = 0 
Query:    1 MKFMSTSAQHLRMEQRVVEAGRHQLKYFDKLKKEFNLIRSLYLACHGRVQAIDELEMCISRLRFPTHYEEMTEGFCEARNDIVRLGEVSQTRYALLSDRVTASEELKLKNGQMAYLQNLAKVQEDNNGS-NPEPCPICVFPLGSEWAVMTCGHSVCCKCMTTL--QKRSNYKRAAIQCPMCRAQSKLTAISIVTAKPAAVKSTDTDRASSDSNDDILDANISVQGNFSTKIEAVVRRILWIQIEQPKAKTLVFSTWTNVLKVISQALSVNNVEFKSLAGAHPKQFERFLTFFKENEICNVLLLPLHSGAKGLNIIEASHLILTEPALNPSDELQAVGRVHRIGQDKETYVHRFFVRDTVEEKMYHLFKPK-----STQGENTLENELTVDDVVNLIQKTQDE 394
            MK + + A+  R +   V+ G   +  F+  KKE+ L+   ++A   RV A+DEL M   RLR     E            I+   EV Q R  LL+D+  A+ +L+ K GQ+ YL NL K Q+  +G  NPEPCPIC   LG +WAV+TCGH  C +C++ +  Q      R++I+C +CR  +    IS V     A +  D                I V+G+ STK+EAVVR ++ IQ+  P AK LVFSTW +VL +IS+AL+ NN+EF  ++    K F+  L+ FK +   N+LLLPLH+G+ GL IIEA+H++L EP LNP+ ELQA+GRVHRIGQ K T VHRF ++ T+EE+M  + K       ++  +++  + LTV D+ +L  K  +E
Sbjct: 1301 MKAILSFAKSHRFDVEFVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPN---PPVLHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKANQEED----------------IPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRV--KTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSHTNSSAKHSEASVLTVADLADLFTKETEE 1681
The following BLAST results are available for this feature:
BLAST of TCONS_00003350-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SHPRH7.709e-8640.05E3 ubiquitin-protein ligase SHPRH OS=Homo sapiens ... [more]
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