TCONS_00003477-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003477-protein
Unique NameTCONS_00003477-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length811

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003477-protein ID=TCONS_00003477-protein|Name=TCONS_00003477-protein|organism=Clytia hemisphaerica|type=polypeptide|length=811bp
MVLKKSKYGGNTGNTLRNLFRTDFINEARDTVFIQERSNENIIHSKQISN
NPNQEPRVVRNVEFSLKKRKNWQLQGQLEAKFGKTDKKIEILETLPYYNS
HYRRARMCVSSVKDSEGRSEQNYSFKPNNIRCDRESDADCQFIIKKPSMT
ATYPFKLESEVRGSNFKRKYHKDRKYNWGKWRYGGVWDPRIKNSMTLRQN
VDHQVFENEQYFESEESEFNADDEEFGIEYSYKEQYLNLMELKLKKDSEI
KSTPKVKKAKRKFNRNLLVEPKEKHIIEIEAPVSSIYQESSDKEDNVDVD
NSVIVTFNNDSIEQNLLHDVYGQFYVEGQTMQRKFIIMNEVDPMSSKILF
EVQSTSESISTFKVTFLGFDGDLDLDMLELFTVDEPMYFHNFVDMFYPGL
STRDTEGPTIPLKNEDEKISTKSESQLIIDSGFYHYDQAEYSSSLFPTAT
ECSNCFNEISSETYTTTLNKCGHLFCNECWEEYFKSKITNRSTKNITCLA
YKCESVIDVVTLLSKVTWDLFNVYIKGYTKQLIQKSKNIESCPNNFCKHV
VIVDESLIPHVPKASEILSRTLEVQCGKCHRSWCFTCKKTTHWPLSCRTY
AKLNTLTERLVKYGNIDSTGRVLKTNVRGKHCPRCGKFIEKNGGCYVMMC
ICSNEGFCWNCTTPFNEHGNGCQQSTKEYAFMPILSVKEKRLMEVLTESN
SNVILNRLWRQICNRKLTFKVMFYQSALESMKILKKSINVLRMLSISKLV
EPKLTSPKIMSYCRRISFSNELLIQTLYRGIYSGKMNTDELELHTADIEN
ILKSISANIKS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001933XLOC_001933Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003477TCONS_00003477Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002867IBR_dom
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002867IBR domainSMARTSM00647ibrneu5coord: 611..672
e-value: 0.13
score: 11.5
coord: 522..597
e-value: 1.4E-6
score: 37.9
IPR002867IBR domainPFAMPF01485IBRcoord: 528..597
e-value: 6.6E-9
score: 35.8
NoneNo IPR availableGENE3D2.20.25.20coord: 541..601
e-value: 1.5E-6
score: 28.0
coord: 631..676
e-value: 1.9E-5
score: 24.4
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 624..673
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 450..530
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 447..516
e-value: 1.7E-4
score: 20.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 452..498
score: 9.642

Blast
[Close]
BLAST of TCONS_00003477-protein vs. Swiss-Prot (Human)
Match: ARI1 (E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens GN=ARIH1 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 6.581e-20
Identity = 69/214 (32.24%), Postives = 102/214 (47.66%), Query Frame = 0 
Query:  463 TYTTTLNKCGHLFCNECWEEYFKSKITNRST-KNITCLAYKCESVIDVVTLLSKVTWDLFNV-YIKGYTKQLIQKSKNIESCPNNFCKHVVIVDESLIPHVPKASEILSRTLEVQCGKCHRSWCFTCKKTTHWPLSCRTYAKLNTLTERLVKYGNIDS-TGRVLKTNVRGKHCPRCGKFIEKNGGCYVMMCICSN--EGFCWNCTTPFNEHGNG 671
            +Y T L +CGH FC +CW EY  +KI      + I+C A+ C+ ++D  T++  +T     + Y    T   ++ ++ ++ CP   C HVV V        P A         V+C KC R +CF C +  H P+ C+   K        +K  + DS T   +  N   K CP+C   IEK+GGC  M+C   N    FCW C  P+  HG+ 
Sbjct:  196 SYFTGL-ECGHKFCMQCWSEYLTTKIMEEGMGQTISCPAHGCDILVDDNTVMRLITDSKVKLKYQHLITNSFVECNRLLKWCPAPDCHHVVKV------QYPDAK-------PVRC-KCGRQFCFNCGENWHDPVKCKWLKK-------WIKKCDDDSETSNWIAANT--KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSA 385
The following BLAST results are available for this feature:
BLAST of TCONS_00003477-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ARI16.581e-2032.24E3 ubiquitin-protein ligase ARIH1 OS=Homo sapiens ... [more]
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