TCONS_00003508-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00003508-protein
Unique Name	TCONS_00003508-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	630

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00003508-protein ID=TCONS_00003508-protein|Name=TCONS_00003508-protein|organism=Clytia hemisphaerica|type=polypeptide|length=630bp
MYRKFCHATCLQYSLLAVLLITLVFNVMFVLDNRSRFQESQDQFAKQQAR
DHPKDISPHRENNAEGFVGHKKALEPPRKIRIEAKSSKSSVYVAIDGLKV
YEDSSEGDKTRGIHIVVINEFSGVIMAKRTFDTYLAKEEEAMVLFLNLIT
EGRIVIFTIKDEGTMNLKKVGRNALKTYGSRFAEELSWRSTWAYISRKRN
MWYAEAIQKSPSFNDWAAPVVVQATVQLLAQSAGCDWGNDDVARRRRNFC
SKYEGYGSVCSCTNPAPINLRGDPLTNNNIASLPIAVIAANRPNYLFRML
RGLLSKPGVDPSNVIVYIDGFFDEPSAIAELFKVSVVEHVPICSKNCRIS
QHYKRSLKETFEKYPAADYMIILEEDLDVSKDLMDYFSQLIPVLATDQSL
YCISAWNDQGYEHSSNDPSMLYRVETMPGLGWVLKKSLFMNELYPKWPGS
DKFWDWDMWMRMDGNRKGRECIIPDVSRTYHFGAKGLNMNSYFQDLYFTK
HALNTKSGIHFNISRVEKDSYEQHINDKIRTAEVLDHKENPCSSDRFIPD
TKGRTYIFYIHQTHTGDYETWTNVARCFKLWDLDVRGFHKQMWRFWMKEN
QIFVVGSSSPYIHYKPDNVKPIFLPKKKKE

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001950	XLOC_001950	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00003508	TCONS_00003508	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004139	Glyco_trans_13
IPR029044	Nucleotide-diphossugar_trans

Vocabulary: **Molecular Function**
Term	Definition
GO:0008375	acetylglucosaminyltransferase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006486	protein glycosylation

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006486	protein glycosylation
molecular_function	GO:0008375	acetylglucosaminyltransferase activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004139	Glycosyl transferase, family 13	PFAM	PF03071	GNT-I	coord: 346..609 e-value: 2.1E-45 score: 155.2
None	No IPR available	PFAM	PF15711	ILEI	coord: 111..198 e-value: 2.9E-20 score: 72.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 42..63
None	No IPR available	CDD	cd13937	PANDER_GnT-1_2_like	coord: 80..228 e-value: 2.84191E-64 score: 209.077
IPR029044	Nucleotide-diphospho-sugar transferases	GENE3D	3.90.550.10		coord: 283..497 e-value: 4.0E-21 score: 75.0
IPR029044	Nucleotide-diphospho-sugar transferases	SUPERFAMILY	53448	Nucleotide-diphospho-sugar transferases	coord: 283..616

Blast

[Close]

BLAST of TCONS_00003508-protein vs. Swiss-Prot (Human)
Match: PMGT1 (Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 OS=Homo sapiens GN=POMGNT1 PE=1 SV=2)

HSP 1 Score: 640.958 bits (1652), Expect = 0.000e+0
Identity = 302/631 (47.86%), Postives = 414/631 (65.61%), Query Frame = 0

Query:    3 RKFCHATCLQYSLLAVLLITLVFNVMFVLDNRSRFQESQDQFAKQQARDHPKDISPHRENNAEGFVGHKKALEPPRKIRIEAKSSKSSVYVAIDGLKVYEDSSEGDKTRGIHIVVINEFSGVIMAKRTFDTYLAKEEEAMVLFLNLITEGRIVIFTIKDEGTMNLKKVGRNALKTYGSRFAEELSWRSTWAYISRKRNMWYAEAIQKSPSFNDWAAPVVVQATVQLL-AQSAGCDWGNDDVARRRRNFCSKYEGYGSVCSCTNPAPINLRGDPLTNNNIASLPIAVIAANRPNYLFRMLRGLLSKPGVDPSNVIVYIDGFFDEPSAIAELFKVSVVEHVPICSKNCRISQHYKRSLKETFEKYPAADYMIILEEDLDVSKDLMDYFSQLIPVLATDQSLYCISAWNDQGYEHSSNDPSMLYRVETMPGLGWVLKKSLFMNELYPKWPGSDKFWDWDMWMRMDGNRKGRECIIPDVSRTYHFGAKGLNMNSYFQDLYFTKHALNTKSGIHF-NISRVEKDSYEQHINDKIRTAEVLDHKENPCSSDRFIPDTKGRTYIFYIHQTHTGDYETWTNVARCFKLWDLDVRGFHKQMWRFWMKENQIFVVG-SSSPYIHYKPDNVKPIFLPKKKKE 630
            R+FC    + +     LL+T++ N+  +LD R    E+ +    +Q  D   +     E       G ++ L+      +E  SS+S VYVA+DG  V ED +  ++ RGIH++V+N+ +G +MAKR FDTY   E+EAMVLFLN++  GR++I T+KDEG+ +LK   +  L++ GS+    L WR TWA++ RK    + E   KSP+ + W  PV+++  V L  A+ A C W + ++ RRRR FCSK EGYGSVCSC +P PI    DPL +N + ++P+AVIA NRPNYL+RMLR LLS  GV P  + V+IDG+++EP  +  LF +  ++H PI  KN R+SQHYK SL  TF  +P A + ++LEEDLD++ D   + SQ I +L  D SLYCISAWNDQGYEH++ DP++LYRVETMPGLGWVL++SL+  EL PKWP  +K WDWDMWMRM   R+GRECIIPDVSR+YHFG  GLNMN YF + YF KH  NT  G+   N+  ++K++YE  ++  +  AEVLDH +NPC  D F+PDT+G TY+ +I      D+ TWT +A+C  +WDLDVRG H+ +WR + K+N   +VG  +SPY   KP +V PIFL    KE
Sbjct:   36 RRFCQTGAVLF-----LLVTVIVNIKLILDTRRAISEANEDPEPEQDYD---EALGRLEPPRRRGSGPRRVLD------VEVYSSRSKVYVAVDGTTVLEDEAR-EQGRGIHVIVLNQATGHVMAKRVFDTYSPHEDEAMVLFLNMVAPGRVLICTVKDEGSFHLKDTAKALLRSLGSQAGPALGWRDTWAFVGRKGGPVFGEKHSKSPALSSWGDPVLLKTDVPLSSAEEAECHWADTELNRRRRRFCSKVEGYGSVCSCKDPTPIEFSPDPLPDNKVLNVPVAVIAGNRPNYLYRMLRSLLSAQGVSPQMITVFIDGYYEEPMDVVALFGLRGIQHTPISIKNARVSQHYKASLTATFNLFPEAKFAVVLEEDLDIAVDFFSFLSQSIHLLEEDDSLYCISAWNDQGYEHTAEDPALLYRVETMPGLGWVLRRSLYKEELEPKWPTPEKLWDWDMWMRMPEQRRGRECIIPDVSRSYHFGIVGLNMNGYFHEAYFKKHKFNTVPGVQLRNVDSLKKEAYEVEVHRLLSEAEVLDHSKNPC-EDSFLPDTEGHTYVAFIRMEKDDDFTTWTQLAKCLHIWDLDVRGNHRGLWRLFRKKNHFLMVGVPASPYSVKKPPSVTPIFLEPPPKE 650

The following BLAST results are available for this feature:

BLAST of TCONS_00003508-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00003508-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PMGT1	0.000e+0	47.86	Protein O-linked-mannose beta-1,2-N-acetylglucosam...	[more]

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TCONS_00003508-protein (polypeptide) - C. hemisphaerica