TCONS_00003567-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003567-protein
Unique NameTCONS_00003567-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length590

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003567-protein ID=TCONS_00003567-protein|Name=TCONS_00003567-protein|organism=Clytia hemisphaerica|type=polypeptide|length=590bp
MLDESTISKVCSKIMVVKTIEKPVYDVIYIVEATVANSQHFEDLRTSYIL
PSIKFFNNGNTPSETDWFGVEGVGTQYCLLTFTNQLNQAVTCKGIKNNAF
EFTNQMKQLRLTSGGISECSLLIEAFAYALQMFDVMANNRDKSITSNVTK
HCVVISHLPPFIYPVIGTQEYKGFTFDMLQDMVIKKDINFSILSGRFVSK
FREMIKKTSPNEAANVISKSSQIAVQPHHMVFLKGITLPTEDPPEVKAEP
NTTTTTTATATAGMKRPAAEELQAITKKIKDEADAQSAQKPAQLPTPMQQ
NSQMLMLQQQQQQQQQSNLQQQTQQQQQQRFNMIQNNQQQNQQQIPMSQP
NTQQQFQQQQNQVQQQQQNPQLQQQITQQNIQQNPQQLLINQQQQQQQQK
PYQMQNMPFTNMQNQQSVAALLSNMAKNSQSNNLNQQQKQQMAQQVSTAQ
QMNMLQKQRMMLAAGQLPLQNLLQQQKMQQLPGGAQQNPQQQMQQQQNTQ
QNVQQNAQQVASNQQQQLNNQQQVQQQNQQQRPQQGQQPNQQQLTTQQQQ
QQRKTIWXKSTTTDNTATTTTKENDLDRSTTVAGNDWRAG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001991XLOC_001991Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003567TCONS_00003567Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
IPR021419Mediator_Med25_VWA
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 305..329
NoneNo IPR availableCOILSCoilCoilcoord: 493..524
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 71..351
e-value: 4.9E-4
score: 18.9
IPR021419Mediator complex, subunit Med25, von Willebrand factor type APFAMPF11265Med25_VWAcoord: 23..236
e-value: 3.5E-43
score: 147.8

Blast
[Close]
BLAST of TCONS_00003567-protein vs. Swiss-Prot (Human)
Match: MED25 (Mediator of RNA polymerase II transcription subunit 25 OS=Homo sapiens GN=MED25 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 2.304e-36
Identity = 72/221 (32.58%), Postives = 122/221 (55.20%), Query Frame = 0 
Query:   24 VYDVIYIVEATVANSQHFEDLRTSYILPSIKFFNNGNTPSETDWFGVEGVGTQYCLLTFTNQLNQA----VTCKGIKNNAFEFTNQMKQLRLTSGGISECSLLIEAFAYALQMFDVMANNRDKSITSNVTKHCVVISHLPPFIYPVIGTQEYKGFTFDMLQDMVIKKDINFSILSGRFVSKFREMIKKTSPNEAANVISKSSQIAVQPHHMVFLKGITLPT 240
            V DV++++E T     +FE LR  Y+LP+I++FN G  P+ETD FG +  GTQY L+ F N ++ A    V C    ++A+EF   +  ++   GG   CSL+ E  + ALQ+FD     R++       + C++I + PP++ P + +  Y G T + L   + ++ I+FSI+S R +   R + +K +P      +   + ++  P HMV ++G+ LP 
Sbjct:   15 VADVVFVIEGTANLGPYFEGLRKHYLLPAIEYFNGG-PPAETD-FGGDYGGTQYSLVVF-NTVDCAPESYVQCHAPTSSAYEFVTWLDGIKFMGGGGESCSLIAEGLSTALQLFDDFKKMREQ--IGQTHRVCLLICNSPPYLLPAVESTTYSGCTTENLVQQIGERGIHFSIVSPRKLPALRLLFEKAAPPALLEPLQPPTDVSQDPRHMVLVRGLVLPV 230
The following BLAST results are available for this feature:
BLAST of TCONS_00003567-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MED252.304e-3632.58Mediator of RNA polymerase II transcription subuni... [more]
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