TCONS_00003767-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003767-protein
Unique NameTCONS_00003767-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003767-protein ID=TCONS_00003767-protein|Name=TCONS_00003767-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
PAKVEKRISLFYLANDVIQNGRKKAKDLVTAFGKAFLDVIHLYRESKNKG
QVERVLSIWVERNVYEAGYVNKLKELLNNGVAPQPTSPVKTSPLKVQQKR
SSVSSNSNVVQSSTKKSVPANFKVSTLLMSIKKSVSLDSDAERKSKKLEG
MRIDATSVDSIKNVKDRSSVGHFHKEFDDSKIMLEDYINTLRHNVQEKQK
ILPLLNSSEAFYALAQDEAKVIVNAYKTFGNRLNSMKRKLDVKISKLEDD
ASRTPEEQTDSRGHKMRSSSGGSIQDMDL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002101XLOC_002101Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003767TCONS_00003767Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006903RNA_pol_II-bd
IPR008942ENTH_VHS
IPR006569CID_dom
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006903RNA polymerase II-binding domainPFAMPF04818CTD_bindcoord: 7..65
e-value: 2.5E-15
score: 56.9
IPR008942ENTH/VHSGENE3D1.25.40.90coord: 1..92
e-value: 4.5E-16
score: 58.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 246..279
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..110
IPR006569CID domainPROSITEPS51391CIDcoord: 1..81
score: 20.601

Blast
[Close]
BLAST of TCONS_00003767-protein vs. Swiss-Prot (Human)
Match: RPRD2 (Regulation of nuclear pre-mRNA domain-containing protein 2 OS=Homo sapiens GN=RPRD2 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 9.397e-32
Identity = 90/260 (34.62%), Postives = 139/260 (53.46%), Query Frame = 0 
Query:    7 RISLFYLANDVIQNGRKKAKDLVTAFGKAFLDVIH----LYRESKNKGQVERVLSIWVERNVYEAGYVNKLKELLNNGVAPQPT--SPVKTSPLKVQQKRSSVSSNSNVVQSSTKKSVPANFKVSTL---LMSIKKSVSLDSDAERKSKKLEGMRIDATSVDSIKNVKDRSSVGHFHKEFDDSKIMLEDYINTLRHNVQEKQKILPLLNSSEAFYALAQDEAKVIVNAYKTFGNRLNSMKRKLDVKISKLEDDASRTPEE 257
            R++LFYLANDVIQN ++K   +   F ++F DV+     L ++      VER+  IW +RNVY    +  L+E L+     Q      +   P K Q K+S  S+N    +++ K  + A F+   L   L+  K+S   +   E K K+L  MR+D  S +++K +KD++    F KEF+++   LE+++N L   V+    +   L ++  FY     E KV+ NAYKTF NR+N++K+KLD   S L D     PEE
Sbjct:   74 RLNLFYLANDVIQNCKRKNAII---FRESFADVLPEAAALVKDPSVSKSVERIFKIWEDRNVYPEEMIVALREALSTTFKTQKQLKENLNKQPNK-QWKKSQTSTNP---KAALKSKIVAEFRSQALIEELLLYKRS---EDQIELKEKQLSTMRVDVCSTETLKCLKDKTGGKKFSKEFEEASSKLEEFVNGLDKQVKNGPSLTEALENAGIFYEAQYKEVKVVANAYKTFANRVNNLKKKLDQLKSTLPD-----PEE 318
The following BLAST results are available for this feature:
BLAST of TCONS_00003767-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPRD29.397e-3234.62Regulation of nuclear pre-mRNA domain-containing p... [more]
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