TCONS_00003777-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00003777-protein
Unique Name	TCONS_00003777-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	396

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00003777-protein ID=TCONS_00003777-protein|Name=TCONS_00003777-protein|organism=Clytia hemisphaerica|type=polypeptide|length=396bp
MRSLSIVTLFAVVCCTVTFGTVIQRKRSSSNKRIICFYANWAQYRKGRGR
FLPHQIPADLCTHITYAHLQVDLTTHELVKRQRNDEFLLKELVKLKKKNP
ALKIIISVGGWKHEYKPRFSKMVQNERTRAIFIQSVLKWIQKTEVDGLSI
DWEYPTKRGTSGPGDKHRYTLLLKELRAAFDEEERPLTLSASVSSGRKKI
DTVYEHKKFIKYLDWVNVMAYALHGAWRKFAGHHTTMTGATNVEDSLNAW
QEKGIPDEKINLGVATYGRTFTLKDPTNYGLGAPVTNPAHGKPGKYTRIK
GALSYYEFCDQQWDHKIPSYDSKARKPYASRGDQWIGYESPRSIRSSIAY
LMQKNNNRLGGIAIWKLGYDDFTGTFCHEGKFPLVNAARQGVYGIA

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002105	XLOC_002105	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00003777	TCONS_00003777	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011583	Chitinase_II
IPR001223	Glyco_hydro18_cat
IPR017853	Glycoside_hydrolase_SF
IPR029070	Chitinase_insertion

Vocabulary: **Molecular Function**
Term	Definition
GO:0008061	chitin binding

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0008061	chitin binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011583	Chitinase II	SMART	SM00636	2g34	coord: 32..370 e-value: 4.5E-108 score: 375.0
IPR001223	Glycoside hydrolase family 18, catalytic domain	PFAM	PF00704	Glyco_hydro_18	coord: 33..370 e-value: 1.8E-77 score: 261.0
None	No IPR available	GENE3D	3.20.20.80		coord: 12..395 e-value: 6.0E-93 score: 311.9
IPR017853	Glycoside hydrolase superfamily	SUPERFAMILY	51445	(Trans)glycosidases	coord: 339..390 coord: 32..267
IPR029070	Chitinase insertion domain	SUPERFAMILY	54556	Chitinase insertion domain	coord: 267..338

Blast

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BLAST of TCONS_00003777-protein vs. Swiss-Prot (Human)
Match: CHIT1 (Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 2.693e-92
Identity = 144/375 (38.40%), Postives = 218/375 (58.13%), Query Frame = 0

Query:   30 SNKRIICFYANWAQYRKGRGRFLPHQIPADLCTHITYAHLQVDLTTHELVKRQRNDEFLLKELVKLKKKNPALKIIISVGGWKHEYKPRFSKMVQNERTRAIFIQSVLKWIQKTEVDGLSIDWEYPTKRGTSGPGDKHRYTLLLKELRAAFDEEERP-----LTLSASVSSGRKKIDTVYEHKKFIKYLDWVNVMAYALHGAWRKFAGHHTTM------TGAT---NVEDSLNAWQEKGIPDEKINLGVATYGRTFTLKDPTNYGLGAPVTNPAHGKPGKYTRIKGALSYYEFCDQQWDHKIPSYDSKARKPYASRGDQWIGYESPRSIRSSIAYLMQKNNNRLGGIAIWKLGYDDFTGTFCHEGKFPLVNAARQ 390
            S  +++C++ NWAQYR+G  RFLP  +   LCTH+ YA     +T H+L   + NDE L +E   LKK NP LK ++++GGW    + +F+ MV     R  F+ S +++++K   DGL +DWEYP  +G+    DK R+T L+++L  AF +E +      L LSA+V +G+  +D  YE  K  + LD+VN+MAY  HG+W K  GH++ +      +GA    NV+ ++  W +KG P  K+ LG+ TYGR+FTL   ++  +GAP T    G PG +T+  G L+YYE C   W           + PY  R +QW+G++   S ++ ++YL QK    LGG  +W L  DDF G  C++G++PL+   RQ
Sbjct:   20 SAAKLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAF--AGMTNHQLSTTEWNDETLYQEFNGLKKMNPKLKTLLAIGGWNFGTQ-KFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEYPGSQGSPAV-DKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPASKLILGMPTYGRSFTLASSSDTRVGAPAT--GSGTPGPFTKEGGMLAYYEVCS--WKGATKQRIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKG---LGGAMVWALDLDDFAGFSCNQGRYPLIQTLRQ 383

The following BLAST results are available for this feature:

BLAST of TCONS_00003777-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00003777-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CHIT1	2.693e-92	38.40	Chitotriosidase-1 OS=Homo sapiens GN=CHIT1 PE=1 SV...	[more]

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TCONS_00003777-protein (polypeptide) - C. hemisphaerica