TCONS_00003814-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00003814-protein
Unique Name	TCONS_00003814-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	766

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00003814-protein ID=TCONS_00003814-protein|Name=TCONS_00003814-protein|organism=Clytia hemisphaerica|type=polypeptide|length=766bp
MLRIPNEEKAPNIQITPSESIPISPQTNEEKVVYLVRQTGIEKEIAREFL
ESNGWNLQEALIGYKQLVQHEKQAEEEKHDQTKLSTYDFDKRKVSRGFSL
SNFKIIQDEREKQKTLVCQESTTQDSFKVLGPSSRESFVLPDISMLDKDV
AYIIKTELISKSALHKLTNVGRLNWWTEMGTCRKLFPLLTVGDGNCLLHA
ASLGMWGFHDRMLILRKALYQMFLNPIAIKALKRRWKYNMWVDNMKCGGL
TFTRQEWDTEWNTVVGLTSNVSHKLESDSSQNCKRITRQISLSSSNSELE
EGESLDSLEPIHVYALSNLLCRPIIVLSEDMLKDAEGRPIAPIPFGGIYL
PLEQDVSKCYKYPLILAFESSHFSALVPADGDNLHNGEKLSSSVPLQNKD
LAFLDLKFAMDPGSTWDMVQDDSVKEERMELTLQEKIILLRKYMDVVKVP
SKKAKPAPPPVNDLRVGSVIDHVHNVLVGRPENLQPPAPEPDIMLVCAKI
SMKNRPKHYKEMIQNFIDTKMVEAKELRDLQNRCPNCGAEGFPHLKGYCE
WCFERAKMVGGKSPSPKQKSPISTLVRRTNKLLIGEPDNNKNQKQNLLCS
PPSPRTSSKTLPMPAKKKENNSIPSTQNVTQDEPLPMKSRSADNIHYPPS
MRGQQTREQIISQEEAGFYRSQSLSNRPEVAPLNPSLSRPQTSEPSSRPQ
ISRPLSDPQNTNESQPSRPQTSPNTSSSTSPGEFVPGKPCKVSGCNFYGS
NQTLGFCSGCYRQYNH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002126	XLOC_002126	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00003814	TCONS_00003814	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR002653	Znf_A20
IPR003323	OTU_dom
IPR009060	UBA-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0003677	DNA binding
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002653	Zinc finger, A20-type	SMART	SM00259	A20_3	coord: 531..554 e-value: 34.0 score: 5.0 coord: 737..762 e-value: 0.038 score: 23.1
IPR002653	Zinc finger, A20-type	PROSITE	PS51036	ZF_A20	coord: 528..561 score: 6.756
IPR002653	Zinc finger, A20-type	PROSITE	PS51036	ZF_A20	coord: 734..766 score: 8.365
None	No IPR available	PFAM	PF14555	UBA_4	coord: 39..61 e-value: 7.4E-6 score: 25.6
None	No IPR available	GENE3D	1.10.8.10		coord: 24..83 e-value: 9.5E-8 score: 31.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 584..657
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 672..734
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	CDD	cd14273	UBA_TAP-C_like	coord: 39..64 e-value: 2.15336E-4 score: 38.5357
IPR003323	OTU domain	PFAM	PF02338	OTU	coord: 192..373 e-value: 1.2E-16 score: 61.2
IPR003323	OTU domain	PROSITE	PS50802	OTU	coord: 185..379 score: 13.446
IPR009060	UBA-like	SUPERFAMILY	46934	UBA-like	coord: 18..68

Blast

[Close]

BLAST of TCONS_00003814-protein vs. Swiss-Prot (Human)
Match: OTU7B (OTU domain-containing protein 7B OS=Homo sapiens GN=OTUD7B PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 6.753e-80
Identity = 163/451 (36.14%), Postives = 239/451 (52.99%), Query Frame = 0

Query:   35 LVRQTGIEKEIAREFLESNGWNLQEALIGYKQLVQ-HEKQ---AEEEKHDQTKLSTYDFDKR--------------------KVSRGFSLSNFKIIQDEREKQKTLVCQESTTQDSFKVLGPSSRESFVLPDISMLDKDVAYIIKTELISKSALHKLTNVGRLNWWTEMG-TCRKLFPLLTVGDGNCLLHAASLGMWGFHDRMLILRKALYQMFLNPIAIKALKRRWKYNMWVDNMKCGGLTFTRQEWDTEWNTVVGLTSNVSHKLESDSSQNCKRITRQISLSSSNSELEEGESLDSLEPIHVYALSNLLCRPIIVLSEDMLKDAEGRPIAPIPFGGIYLPLEQDVSKCYKYPLILAFESSHFSALVPADGDNLHNGEKLSSSVPLQNKDLAFLDLKFAMDPGSTWDMVQDDS--VKEERMELTLQEKIILLRKYMDVVKVPSKKAKPAP 458
             VR TG E  +AR+ LE   W++  AL  ++QL Q H      +  E    ++     F  R                    ++SRG S ++  I+   R    +      + +   ++  P    +F LPD+++ ++D    I+ +LI +S L  L   GRLNWW  +  T ++L PL T GDGNCLLHAASLGMWGFHDR L+LRKALY +    +  +ALKRRW++     N K  GL +T  EW  EWN ++ L S+        +  NC  +           E  E    +SLE  HV+ L+++L RPI+V+++ ML+D+ G   APIPFGGIYLPLE   S+C++ PL+LA++ +HFSALV  +        K  + +PL + +   L L FA+DPG  W+  +DDS  V+   + L+L+ K+ LL  YM+V  +P      AP
Sbjct:   12 FVRSTGAEPGLARDLLEGKNWDVNAALSDFEQLRQVHAGNLPPSFSEGSGGSRTPEKGFSDREPTRPPRPILQRQDDIVQEKRLSRGISHASSSIVSLARSHVSSNGGGGGSNEHPLEM--PIC--AFQLPDLTVYNEDFRSFIERDLIEQSMLVALEQAGRLNWWVSVDPTSQRLLPLATTGDGNCLLHAASLGMWGFHDRDLMLRKALYALMEKGVEKEALKRRWRWQQTQQN-KESGLVYTEDEWQKEWNELIKLASSEPRMHLGTNGANCGGV-----------ESSEEPVYESLEEFHVFVLAHVLRRPIVVVADTMLRDSGGEAFAPIPFGGIYLPLEVPASQCHRSPLVLAYDQAHFSALVSME---QKENTKEQAVIPLTDSEYKLLPLHFAVDPGKGWEWGKDDSDNVRLASVILSLEVKLHLLHSYMNVKWIPLSSDAQAP 443

The following BLAST results are available for this feature:

BLAST of TCONS_00003814-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00003814-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OTU7B	6.753e-80	36.14	OTU domain-containing protein 7B OS=Homo sapiens G...	[more]

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TCONS_00003814-protein (polypeptide) - C. hemisphaerica