TCONS_00003916-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003916-protein
Unique NameTCONS_00003916-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003916-protein ID=TCONS_00003916-protein|Name=TCONS_00003916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp
MAQLWLHFYEFMFLFCLCFHGLFLLANGACVPGCRCSNWDLNTLKCTSEV
GLTEFPLDLDPTIQFLRFPGNKIEELPSNLSSIVPDLQKLDLSSNKMKSL
PDKTFAGLKKLNMLSLADNELTELGQNIFEGNENTGKLLILLYGNRISKI
HPTAFNGLQADLTLRLQQNLLKELHKDTFAGIRNVHHINLGDNVLERIDP
GLFRDQHHLFLLDLDGNKLTDLHIDTFKYTESLETLNLEGNLLATIPDDL
FRNNIALKEINLRDNKFTELPINLHLPEKVETISFSGNPLLCDCPLKKLY
QNADYVSKYKDLDDAICANDPDRANVKAFLTALNCETTTTTTTTTIQPST
QLTNGTSPPAPIHENSTTNERPITTITKTTVTHVTLDKTSSDKSSWPIVI
GCLLGILVLIVCCGLLLYLFRGRLRERCVAGKLKLRRKKLSSAASVEDFK
YHDAAGWKGASTAMLKQTEGKSYDVNQERYGKAVFIQL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002192XLOC_002192Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003916TCONS_00003916Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675L_dom-like
IPR001611Leu-rich_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 230..253
e-value: 0.24
score: 20.5
coord: 182..205
e-value: 25.0
score: 9.9
coord: 108..131
e-value: 0.12
score: 21.4
coord: 207..229
e-value: 60.0
score: 6.9
coord: 158..181
e-value: 36.0
score: 8.7
coord: 84..107
e-value: 0.014
score: 24.6
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 151..212
e-value: 3.2E-10
score: 39.0
coord: 213..329
e-value: 2.4E-19
score: 68.6
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 26..150
e-value: 7.8E-20
score: 70.4
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 30..300
NoneNo IPR availableGENE3D1.20.5.510coord: 364..424
e-value: 0.0013
score: 18.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 344..368
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 163..219
e-value: 2.7E-11
score: 42.9
coord: 232..290
e-value: 6.7E-7
score: 28.9
coord: 86..134
e-value: 2.0E-10
score: 40.2
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 110..131
score: 6.072
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 256..277
score: 6.826
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 208..229
score: 6.241
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 184..205
score: 4.909
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 62..83
score: 4.963
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 137..157
score: 5.078
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 86..107
score: 7.573
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 232..253
score: 7.543

Blast
[Close]
BLAST of TCONS_00003916-protein vs. Swiss-Prot (Human)
Match: CHAD (Chondroadherin OS=Homo sapiens GN=CHAD PE=1 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.047e-19
Identity = 77/315 (24.44%), Postives = 136/315 (43.17%), Query Frame = 0 
Query:   30 CVPGCRCSNWDLNTLKCTSEVGLTEFPLDLDPTIQFLRFPGNKIEELPSNLSSIVPDLQKLDLSSNKMKSLPDKTFAGLKKLNMLSLADNELTELGQNIFEGNENTGKLLILLYGNRISKIHPTAFNGLQADLTLRLQQNLLKELHKDTFAGIRNVHHINLGDNVLERIDPGLFRDQHHLFLLDLDGNKLTDLHIDTFKYTESLETLNLEGNLLATIPDDLFRN-------------------------NIALKEINLRDNKFTELPINLHLPEKVETISFSGNPLLCDCPLKKLYQNADYVSKYKDLDDAICAN 319
            C   C C + DL  + C  +VGL + P  +    + L    N    L +N    +P+L  L L   +++ +    F GLK+L  L L+ N++  L    F+  + T    + L  N+++++     + L     L+L  N ++EL    F G +++  + L +N L  + PG   D  +L    +D N+L+            +E L L  N L +IPD+ F++                            LK ++L +N+  +LP N    + +ET++ + NP  C C L+ L +   ++       DA CA+
Sbjct:   23 CPQNCHCHS-DLQHVIC-DKVGLQKIP-KVSEKTKLLNLQRNNFPVLAANSFRAMPNLVSLHLQHCQIREVAAGAFRGLKQLIYLYLSHNDIRVLRAGAFD--DLTELTYLYLDHNKVTELPRGLLSPLVNLFILQLNNNKIRELRAGAFQGAKDLRWLYLSENALSSLQPGALDDVENLAKFHVDRNQLSSYPSAALSKLRVVEELKLSHNPLKSIPDNAFQSFGRYLETLWLDNTNLEKFSDGAFLGVTTLKHVHLENNRLNQLPSNFPF-DSLETLALTNNPWKCTCQLRGLRR---WLEAKASRPDATCAS 328
The following BLAST results are available for this feature:
BLAST of TCONS_00003916-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHAD4.047e-1924.44Chondroadherin OS=Homo sapiens GN=CHAD PE=1 SV=2[more]
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