TCONS_00004017-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004017-protein
Unique Name	TCONS_00004017-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	560

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004017-protein ID=TCONS_00004017-protein|Name=TCONS_00004017-protein|organism=Clytia hemisphaerica|type=polypeptide|length=560bp
MVDKSIGSDHDDLQKVFPKVICLVDILMQVDQLITAQAQHKYGSSKTLLN
SLKTMTKKVGDGFQTSENVEFQVSKEMVGIGVWEVPVTDEKDVFVIGGYS
NKTSYVDIKIQKPSLDDTSIQSVMRIPPTALKERQNSYISSINYQNSGLF
LTKNELNNLLDGNENIETKGKKHNISDAQTSNIVDGNVFAVSIGETSISN
LQQPITLLFRNQTELKANDTCKFWRFAYENDRHHGQWSDEGCHRITTTNI
TGFIKCQCDHLTNFALIINSDQEFYNPYAIQIVTYVGCGISIASLFVTLL
VYVFFSKINRKLAPKLLICLSSSLLILLIIFIIGAERNAKTYHVCQLMAV
LIHYFTLSTFCWMACESFNLYRNFINIFKRTRNENGILVKMSLFSWGVPL
VIVVITMVTSLEEYGNAYVCVVHGFSFYYGVLLPVGLITLGNWIVLVLSL
RGMRRAKILKRSRRKRDQENQQWLHFVRAATCATILGLTWTFGILAVGYL
KTTFQWLFCIFNSLQGFAIFLLFVVNNKEAKREIYKWYKGERLNSDSAEL
SSTGKPASNF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002257	XLOC_002257	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004017	TCONS_00004017	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000832	GPCR_2_secretin-like
IPR000203	GPS
IPR017981	GPCR_2-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity
GO:0004888	transmembrane signaling receptor activity

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway
GO:0007166	cell surface receptor signaling pathway

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007166	cell surface receptor signaling pathway
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity
molecular_function	GO:0004888	transmembrane signaling receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000832	GPCR, family 2, secretin-like	PRINTS	PR00249	GPCRSECRETIN	coord: 282..306 score: 28.41 coord: 505..526 score: 21.49 coord: 347..370 score: 26.77
IPR000832	GPCR, family 2, secretin-like	PFAM	PF00002	7tm_2	coord: 279..519 e-value: 1.7E-29 score: 102.7
IPR000203	GPS motif	SMART	SM00303	GPS_3	coord: 217..273 e-value: 0.0064 score: 25.1
IPR000203	GPS motif	PFAM	PF01825	GPS	coord: 220..266 e-value: 6.0E-11 score: 42.7
IPR000203	GPS motif	PROSITE	PS50221	GPS	coord: 218..273 score: 13.645
None	No IPR available	GENE3D	1.20.1070.10		coord: 265..559 e-value: 2.7E-30 score: 104.8
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 276..543
IPR017981	GPCR, family 2-like	PROSITE	PS50261	G_PROTEIN_RECEP_F2_4	coord: 280..527 score: 25.689

Blast

[Close]

BLAST of TCONS_00004017-protein vs. Swiss-Prot (Human)
Match: AGRG4 (Adhesion G-protein coupled receptor G4 OS=Homo sapiens GN=ADGRG4 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 7.409e-42
Identity = 123/383 (32.11%), Postives = 198/383 (51.70%), Query Frame = 0

Query:  171 KKHNISDAQTSNIVDGNVFAVSIGETSISNLQQPITLLFR----NQTELKANDTCKFWRFAYENDRHHGQWSDEGCHRITTTNITGFIKCQCDHLTNFALIIN---SDQEFYNPYAIQIVTYVGCGISIASLFVTLLVYVFFSKINRKLAPKLLICLSSSLLILLIIFIIGAERNA-KTYHVCQLMAVLIHYFTLSTFCWMACESFNLYRNFINIFKRTRNENGILVKMSLFSWGVPLVIVVITMVTSLEEYG----NAYVCVVHGFS-FYYGVLLPVGLITLGNWIVLVLSLRGMRRAKI-LKRSRRKRDQENQQWLHFVRAATCAT-ILGLTWTFGILAVGYLKTTFQWLFCIFNSLQGFAIFLLFVVNNKEAKREIYKWY 538
            K  N++ A T+ +V  ++      +  I NL  P+ +  +    NQ   + +  C FW F  EN+   G W+  GC ++  TN+  +  CQCDHLT+F ++++   S  +  N   + ++TY GCGIS   L V ++ Y+ F K+ +    K+LI L ++LL+L ++F+I +  ++ +   VC   AV +HYF L +F WM  E+ ++Y   + +F      N IL K  L  WG+P ++V IT+    + YG        C +   S FY  V+    LI L N  +    L  +   K  ++++RRK        LH ++     T +LGLTW F   A G ++  F +LF IFN+LQGF IF+   V  KE+ RE ++ +
Sbjct: 2637 KTKNVTKALTTYVVSASIS----DDMFIQNLADPVVITLQHIGGNQNYGQVH--CAFWDF--ENNNGLGGWNSSGC-KVKETNV-NYTICQCDHLTHFGVLMDLSRSTVDSVNEQILALITYTGCGISSIFLGVAVVTYIAFHKLRKDYPAKILINLCTALLMLNLVFLINSWLSSFQKVGVCITAAVALHYFLLVSFTWMGLEAVHMYLALVKVF-NIYIPNYIL-KFCLVGWGIPAIMVAITVSVKKDLYGTLSPTTPFCWIKDDSIFYISVVAYFCLIFLMNLSMFCTVLVQLNSVKSQIQKTRRK------MILHDLKGTMSLTFLLGLTWGFAFFAWGPMRNFFLYLFAIFNTLQGFFIFVFHCV-MKESVREQWQIH 3000

The following BLAST results are available for this feature:

BLAST of TCONS_00004017-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004017-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
AGRG4	7.409e-42	32.11	Adhesion G-protein coupled receptor G4 OS=Homo sap...	[more]

You are here

TCONS_00004017-protein (polypeptide) - C. hemisphaerica