TCONS_00004025-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004025-protein
Unique NameTCONS_00004025-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length231

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004025-protein ID=TCONS_00004025-protein|Name=TCONS_00004025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MTGFLIDDILSKKVAKENETIHVRSAFLPTQSDHHCKRLYAPPLPPLLPP
SNHHYHPYHRHHRFYRSRSPPPAISPRSSHSDDLDLDKLSRRPRTSITMC
QREFLETEFQKERYPTLAYIDKLSRKVHLQQYVIKVWFQNRRAKYRKEGH
RRKPSKEDTNTKPEYFTERKESKDDKVHLLKVHSSEKYTPASATKYSGRY
LYNERNSAQTLLWQPRMKSSCEEHCGCFTCG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002261XLOC_002261Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004025TCONS_00004025Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR017970Homeobox_CS
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 90..152
e-value: 8.8E-20
score: 81.7
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 91..147
e-value: 1.7E-18
score: 66.1
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 88..148
score: 17.734
NoneNo IPR availableGENE3D1.10.10.60coord: 74..149
e-value: 3.2E-20
score: 71.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 147..170
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..88
NoneNo IPR availableCDDcd00086homeodomaincoord: 91..148
e-value: 1.74371E-15
score: 66.8832
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 123..146
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 69..148

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004025-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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