TCONS_00004274-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004274-protein
Unique Name	TCONS_00004274-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	926

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004274-protein ID=TCONS_00004274-protein|Name=TCONS_00004274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=926bp
MKIKEIQRTANVAWSPKQQYPIYLAAGTAAQQLDASFSTSAALDIYHVNL
ESKEFDMPIVGSLPSQHRFHKLLWSDCGMDNDEHKNGLILGGTDNGELCV
ISAAAILNNKPEEAHVTTFSDHSGAVTALDINRFQSHIVASGGPDSEIFI
WDLKNIGTPLTPGPKTTPPDQISCLAWNKQVQHILASSTQTGRVVVWDLR
KSEPIIKVGDQSSMYHYKSIAWHPDVATQILIANEDDRSPVIQMWDLRFA
ASPMKVMEGHQRGILSLAWCPEDSDLLMSCGKDNKILCWDPNTHPQTGEI
VYELPSTAQWTSDVCWCPRNPNVVSTTAFDGHITVSTLMGGSQEVQQQQQ
RSQISDSFGIQQDAFTPPITQQPQVLRIEPLKKPPKWMRKPCAARFGFGG
KLVSFGNVKEPGHPKQVFVSQVVTDTELINRSHELESSLMSGQLEAYCNL
KISNAHEKEEELLWEFIKCNFSAEPRMQFLDLLGFNPQDLAKKISALNAP
PESSMNKSEPSGVNPTELAEKIENLQVAGESDGGEKLFGSGAVSPMAGSK
TPGSESEGSALFDQIAAGTSTIPDTTEENIEQEMAPEPIEPFSIPTGDDT
DGLICQALLAGNFEAAVDVCFNDQRMADGLLLAIAGGPDLFLKTQKRYLA
LTKSSVSKIVSAVVNRDWKSIVDGALVQNWREALSMLVTYSKAEEFSELC
CMLGERLENEANDFNAALICYVCAGDVERMVSCWTRSNTGKDASPLTLQS
LIEKVMVLKKSTENNRSLVTDNTHLAEQLCNYAKMLSSQGNLQTAMMYLS
TVNNESVSILKDRVFRAHGQLQGFAPECPFQRLDLRPPHDNRLPHQSKTN
KYGASGRGAQQPSPNTVAPSYGQQQPNYFHPSPVHNPPNXVWSTTTQLFP
SFACTQPAKRLLTAQFIRALAANKYV

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002374	XLOC_002374	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004274	TCONS_00004274	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom
IPR024298	ACE1_Sec16_Sec31
IPR019775	WD40_repeat_CS
IPR017986	WD40_repeat_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 297..337 e-value: 2.4 score: 14.6 coord: 161..198 e-value: 1.6 score: 15.6 coord: 112..152 e-value: 9.1E-6 score: 35.2 coord: 207..246 e-value: 380.0 score: 0.7 coord: 250..290 e-value: 1.4E-7 score: 41.2
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 253..290 e-value: 0.01 score: 16.6 coord: 115..152 e-value: 0.061 score: 14.1
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 119..155 score: 11.01
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 257..290 score: 10.876
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 1..339 e-value: 1.5E-47 score: 161.7
IPR024298	Ancestral coatomer element 1, Sec16/Sec31	PFAM	PF12931	Sec16_C	coord: 608..805 e-value: 8.4E-6 score: 25.5
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 139..153
IPR017986	WD40-repeat-containing domain	PROSITE	PS50294	WD_REPEATS_REGION	coord: 119..299 score: 19.591
IPR017986	WD40-repeat-containing domain	SUPERFAMILY	50978	WD40 repeat-like	coord: 12..335

Blast

[Close]

BLAST of TCONS_00004274-protein vs. Swiss-Prot (Human)
Match: SC31A (Protein transport protein Sec31A OS=Homo sapiens GN=SEC31A PE=1 SV=3)

HSP 1 Score: 745.347 bits (1923), Expect = 0.000e+0
Identity = 383/859 (44.59%), Postives = 554/859 (64.49%), Query Frame = 0

Query:    1 MKIKEIQRTANVAWSPKQQYPIYLAAGTAAQQLDASFSTSAALDIYHVNLESKEFDMPIVGSLPSQHRFHKLLWSDCGMDNDEHKNGLILGGTDNGELCVISAAAILNNKPEEAHVTTFSDHSGAVTALDINRFQSHIVASGGPDSEIFIWDLKNIGTPLTPGPKTTPPDQISCLAWNKQVQHILASSTQTGRVVVWDLRKSEPIIKVGDQSSMYHYKSIAWHPDVATQILIANEDDRSPVIQMWDLRFAASPMKVMEGHQRGILSLAWCPEDSDLLMSCGKDNKILCWDPNTHPQTGEIVYELPSTAQWTSDVCWCPRNPNVVSTTAFDGHITVSTLMGGSQEVQQQQQRSQISDSFGIQQDAF-----TPPI---TQQPQVLRIEPLKKPPKWMRKPCAARFGFGGKLVSFGNVKEPGH--------PKQVFVSQVVTDTELINRSHELESSLMSGQLEAYCNLKISNAHEKEEELLWEFIKCNFSAEPRMQFLDLLGFNPQDLAKKIS-ALNAPPESSMNKSEPSGVNPTELAEKIENLQVAGESDGGEKLFGSGAVSPMAGSKTPGSESEGSALFDQIAAGTSTIPDTTEENIEQEMAPEPIEPFSIPTGDDTDGLICQALLAGNFEAAVDVCFNDQRMADGLLLAIAGGPDLFLKTQKRYLALTKSSVSKIVSAVVNRDWKSIVDGALVQNWREALSMLVTYSKAEEFSELCCMLGERLENEANDF--NAALICYVCAGDVERMVSCWTRSNTGKDASPLTLQSLIEKVMVLKKSTENNRSLVTDNTH--LAEQLCNYAKMLSSQGNLQTAMMYL-STVNNESVSILKDRVFRAHGQ-LQGF-APECPFQRLDL 835
            MK+KE+ RTA  AWSP Q +PIYLA GT+AQQLDA+FST+A+L+I+ ++L     DM    +  S HR+HKL+W    MD+    +G+++ G +NG + +   + I+    +E  +     H+G V ALD+N FQ+++VASG  +SEI+IWDL N  TP+TPG KT PP+ ISC+AWN+QVQHILAS++ +GR  VWDLRK+EPIIKV D S+  H   +AWHPDVATQ+++A+EDDR PVIQMWDLRFA+SP++V+E H RGIL++AW   D +LL+SCGKD KILC +PN    TGE++YELP+  QW  D+ WCPRNP V+S  +FDG I+V ++MGGS +  +Q+Q  ++S SFG   D F      PP+    Q  Q   + PLKKPPKW+R+P  A F FGGKLV+F NV+ P H           VF+SQVVT+ E ++RS +L+ ++ S     YC  KI  +  + E+ +W F+K NF  + R ++L+LLG+  +DL KKI+ ALN                      K++   VA        L  S  V+   G ++P +E +   L + I           EE  E E  P     F+I    D DGLI QALL GNFE+AVD+C +D RMAD ++LAIAGG +L  +TQK+Y A ++S ++++++AVV ++WK IV+   ++NWREAL+ ++TY+K +EFS LC +LG RLENE +      A +CY+CAG+VE++V+CWT++  G  + PL+LQ LIEKV++L+K+ +  +++ T      LA ++  YA +L++QG++  A+ +L    N  ++  L+DR+ RA G+ + G  +P+ P+++  L
Sbjct:    1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSCATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGD-KEVVIAQNDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQVQHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPN----TGEVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFG-NLDPFGTGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQQQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVNFEDDSRGKYLELLGYRKEDLGKKIALALN----------------------KVDGANVA--------LKDSDQVAQSDGEESPAAEEQ--LLGEHI----------KEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAIILAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYAKPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDG--SHPLSLQDLIEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQL 809

The following BLAST results are available for this feature:

BLAST of TCONS_00004274-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004274-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SC31A	0.000e+0	44.59	Protein transport protein Sec31A OS=Homo sapiens G...	[more]

You are here

TCONS_00004274-protein (polypeptide) - C. hemisphaerica