TCONS_00004276-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004276-protein
Unique NameTCONS_00004276-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004276-protein ID=TCONS_00004276-protein|Name=TCONS_00004276-protein|organism=Clytia hemisphaerica|type=polypeptide|length=718bp
MNNRTQEKTQQHLITKESLRTSISTRAKTPCCGSTTTKENNDQIASSSTA
ETEPATVVNSATKPRCRRQWEQWSWEEKKCFYEGLAEYGKDYSKIQSFMN
KKLKLKNYSDGKTKEQIRFFYHRTWSKIAKKLNLQPEEDSKKACRRELHY
LLCLGELRKKQSAGFGAKVMKQLDELATKGITYVRLNGRNLRVRPPNRYL
RKIYKDISDSPEIQLPKTVTIEFLPNSNMAFNFVQKHAFNPRIRFTGVSI
NARFSEVFEMLNKRFMDVYTNTNLNLQIYPMQSDTDFSKLLSNAIELLAT
YDKTQVTDIVVEKDKPKDNLLVEDVTIETTCTDKEHHQMELEQVLPQIFA
KHGEKETPDGGSSEKGTTLKKSNSFPGYWTYIDAKEIFLRTLFVVFEQKP
VFKFKYEWKQSVDESVDNCTFNKMALQNLAKLCDVKKEEDSVPQTDSRMS
VISPLLQSPNFLYARKPGEGAISTTHQDGHGLMNGTSGKWVLPNRPRPGR
INKSRQQLGNNIAGVTSPLLALSSGKAQCKTVLNNAVAVNLIPQHQQNLL
HMAHLQHNSNKLVNNSASTVVHGVQDEVIAEGFQEHYQALANMIKSSALV
KGQRNNENNNFLKTPVKVNPIPSNIPASPNLEWLNETVDISMTSFLNVCD
MQALQNKRQAMQSKNTASSLHNNLKPNVSLDPVLPKFESSEISQGPLYDL
AFELSNHATKSKDQYXPL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002375XLOC_002375Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004276TCONS_00004276Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 69..127
e-value: 4.1E-4
score: 29.7
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 72..122
e-value: 2.5E-6
score: 27.4
NoneNo IPR availableGENE3D1.10.10.60coord: 71..133
e-value: 3.1E-8
score: 33.0
NoneNo IPR availableCDDcd00167SANTcoord: 73..125
e-value: 2.70433E-4
score: 38.3254
IPR009057Homeobox domain-likeSUPERFAMILY46689Homeodomain-likecoord: 71..127

Blast
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BLAST of TCONS_00004276-protein vs. Swiss-Prot (Human)
Match: CRML (Protein cramped-like OS=Homo sapiens GN=CRAMP1 PE=1 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 7.437e-34
Identity = 85/210 (40.48%), Postives = 117/210 (55.71%), Query Frame = 0 
Query:   65 RCRRQWEQWSWEEKKCFYEGLAEYGKDYSKIQS--FMNKKLKLKNYSDGKTKEQIRFFYHRTWSKIAKKLNLQPE-EDSKKACRRELHYLLCLGELRKKQSAGFGAKVMKQLDELATKGITYVRLNGRNLRVRPP-NRYLRKI-----YKDISDSPEIQLPKTVTIEFLPNSNMAFNFVQKHAFNPRIRFTGVSINARFSEVFEMLNKRF 265
            + RRQWE WS E+K  F+EGL E+GKD+  IQ+   +  K K K  S  K KEQ+R FY+RTW KI K ++         K   +EL+ L+C GELRKK       K   +L+EL   G T VR  GRNLR++ P  R L+K+       D  D   ++LP  V IE  P +N A+  VQ  A NPR+R   V ++ + S + E L +++
Sbjct:  158 KVRRQWESWSTEDKNTFFEGLYEHGKDFEAIQNNIALKYKKKGKPASMVKNKEQVRHFYYRTWHKITKYIDFDHVFSRGLKKSSQELYGLICYGELRKKIGGCMDDKNATKLNELIQVGATTVRYKGRNLRIKAPMCRALKKLCDPDGLSDEEDQKPVRLPLKVPIELQPRNNHAWARVQSLAQNPRLRMI-VELHRKVSSLIEFLKQKW 366
The following BLAST results are available for this feature:
BLAST of TCONS_00004276-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRML7.437e-3440.48Protein cramped-like OS=Homo sapiens GN=CRAMP1 PE=... [more]
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