TCONS_00004371-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004371-protein
Unique NameTCONS_00004371-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length440

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004371-protein ID=TCONS_00004371-protein|Name=TCONS_00004371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=440bp
MNVEDTLERCENRLSFLSNKLSEYGKTQQYIKESADSTKKALQGHLMHAK
ETILRNLDHQYERLCTSVDETVKKDIENLFDLEEHLKKEIENLKNILASV
KADEKQLNLQQINQKVTEIGKSQPELPVVSLSFSTKINEAALHSIEDKTR
DLLKLNMTGSVQIMETLERPGAIIVRWDEQPMSDSESVATDTSTITEYIL
QATTKNDGVFYTIYEGENLEYTMTLAEPSKTYKFRVCQYMNTTNGGAVCG
AWSVIKTAATMLSPHVWCEGDCRTDSDLQLYQLSNGGRTATKVFPESSRI
LRSKEPSCQSGQQITFWVDETGESSSNDGIGLICGTQTNKQFTASPNTTV
LNTKGIIYVNGTRMTTKLPSLKKNSIIVIQASKLAHTLNSGAKKYRVSIS
VDDKEVTFDWSASTTSAANEIDALFFGCVFEHTGWQLSVG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002445XLOC_002445Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004371TCONS_00004371Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR003961FN3_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 7..27
NoneNo IPR availableCOILSCoilCoilcoord: 76..110
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 154..265
e-value: 4.1E-9
score: 35.9
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 170..258

Blast
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BLAST of TCONS_00004371-protein vs. Swiss-Prot (Human)
Match: CRLF3 (Cytokine receptor-like factor 3 OS=Homo sapiens GN=CRLF3 PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 4.990e-44
Identity = 121/436 (27.75%), Postives = 201/436 (46.10%), Query Frame = 0 
Query:   17 LSNKLSEYGKTQQYIKESADSTKKALQGHLMHAKETILRNLDHQYERLCTSVDETVKKDIENLFDLEEHLKKEIENLKNILASVK------ADEKQLNLQQINQKVTEIG-KSQPELPVVS--LSFSTKINEAALHSIEDKTRDLLKLNMTGSVQIMETLERPGAIIVRWDEQPMSDSESVATDTSTITEYILQATTKNDGVFYTIYEGENLEYTMTLAEPSKTYKFRVCQYMNTTNGGAVCGAWSVIKTAATMLSPHVWCEGDCRTDSDLQLYQLSNGGRTATKVFPESSRILRSKEPSCQSGQQITFWVDETGESSSNDGIGLICGTQTNKQFTASPNTTVLNTKGIIYVNGTRMTTKLPSLKKNSIIV--IQASKLAHTLNS--GAKKYRVSISVDDKEVTFDWSASTTSAANEIDALFFGCVFEHTGWQLSV 439
            L ++L    + ++ IKESA  T+  L+ H    K T+ + LD +   L   VD   ++ I+ L D ++ ++  +   ++++   +        E+   L    +K + I   S PE+P++      S +++++ L+ ++D       +     VQI E +E+PG IIVRW             D  T  +Y LQ        F  +Y G   E+ +   +P+  Y+FRVC      +G      WSV +   + L PH W  G        + Y LS+    A +   ESS +L S+ P+   GQ +TF V+  G+    D IG+    Q             ++T G ++VNG  MT +LP++   S +   I+A  L  T N+  G  K RV+IS +++EV FDW    +       +L+FGC F + GW++ V
Sbjct:   30 LGHRLEGLREARRQIKESASQTRDVLKQHFNDLKGTLGKLLDERLVTLLQEVDTIEQETIKPLDDCQKLIEHGVNTAEDLVREGEIAMLGGVGEENEKLWSFTKKASHIQLDSLPEVPLLVDVPCLSAQLDDSILNIVKDHIFKHGTVASRPPVQIEELIEKPGGIIVRW---------CKVDDDFTAQDYRLQFRKCTSNHFEDVYVGSETEFIVLHIDPNVDYQFRVCA---RGDGRQEWSPWSVPQIGHSTLVPHEWTAG-------FEGYSLSSRRNIALRNDSESSGVLYSRAPTYFCGQTLTFRVETVGQPDRRDSIGVCAEKQDGYDSLQRDQAVCISTNGAVFVNGKEMTNQLPAVTSGSTVTFDIEAVTLGTTSNNEGGHFKLRVTISSNNREVVFDWLLDQSCG-----SLYFGCSFFYPGWKVLV 441
The following BLAST results are available for this feature:
BLAST of TCONS_00004371-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRLF34.990e-4427.75Cytokine receptor-like factor 3 OS=Homo sapiens GN... [more]
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