TCONS_00004376-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004376-protein
Unique Name	TCONS_00004376-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	365

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004376-protein ID=TCONS_00004376-protein|Name=TCONS_00004376-protein|organism=Clytia hemisphaerica|type=polypeptide|length=365bp
MDLNIDLRQSLQCMRKNDEMCDVCILSKEGTKYPAHKLILAASSPVFKVM
VTKDFKELQSKEIHLRDIEDSLMTTILDFMYTGELSMTNENALDLFMLAD
RMELANLFTSCTRYIKDHIDANNCLGVQQIAERYNQLKLNDFAESYLLRH
FQVFASTEDFLDLTSSELIKILWRDELNVEKEEYLIDFILKWVDHDLENR
NGELEKLMKGLRFPLMNFDFIEGKFRTHPRWKTNKKMAKLVKTIYKGCFQ
IFHRINFDPYPSLKCLRYQYRLPSQVIFLYGGWNRGRTLDTTECFNIKTG
YWSPASHLKDETEGRSYFGIDQLNGEVYMAGGYNGRSYLNTIRKFNPSTK
EWASITPMHYRXLWH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002450	XLOC_002450	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004376	TCONS_00004376	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011705	BACK
IPR006652	Kelch_1
IPR000210	BTB/POZ_dom
IPR015915	Kelch-typ_b-propeller
IPR011333	SKP1/BTB/POZ

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011705	BTB/Kelch-associated	SMART	SM00875	BACK_2	coord: 124..226 e-value: 5.5E-28 score: 109.0
IPR011705	BTB/Kelch-associated	PFAM	PF07707	BACK	coord: 124..221 e-value: 6.9E-25 score: 87.0
IPR006652	Kelch repeat type 1	SMART	SM00612	kelc_smart	coord: 276..325 e-value: 0.043 score: 22.9 coord: 326..365 e-value: 0.096 score: 20.6
IPR006652	Kelch repeat type 1	PFAM	PF01344	Kelch_1	coord: 315..358 e-value: 8.2E-9 score: 34.8 coord: 277..306 e-value: 4.6E-5 score: 22.8
IPR000210	BTB/POZ domain	SMART	SM00225	BTB_4	coord: 21..119 e-value: 6.5E-21 score: 85.5
IPR000210	BTB/POZ domain	PFAM	PF00651	BTB	coord: 14..117 e-value: 3.5E-26 score: 91.5
IPR000210	BTB/POZ domain	PROSITE	PS50097	BTB	coord: 21..89 score: 19.403
IPR015915	Kelch-type beta propeller	GENE3D	2.120.10.80		coord: 247..365 e-value: 1.5E-15 score: 56.4
None	No IPR available	GENE3D	3.30.710.10		coord: 6..159 e-value: 7.3E-38 score: 129.3
None	No IPR available	CDD	cd14735	BACK_Kelch	coord: 119..177 e-value: 1.70652E-14 score: 66.3483
None	No IPR available	SUPERFAMILY	117281	Kelch motif	coord: 272..361
IPR011333	SKP1/BTB/POZ domain	SUPERFAMILY	54695	POZ domain	coord: 6..119

Blast

[Close]

BLAST of TCONS_00004376-protein vs. Swiss-Prot (Human)
Match: KLH20 (Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4)

HSP 1 Score: 192.586 bits (488), Expect = 6.750e-56
Identity = 103/353 (29.18%), Postives = 196/353 (55.52%), Query Frame = 0

Query:    8 RQSLQC---MRKNDEMCDVCILSKEGTKYPAHKLILAASSPVFKVMVTKDFKELQSKEIHLRDIEDSLMTTILDFMYTGELSMTNENALDLFMLADRMELANLFTSCTRYIKDHIDANNCLGVQQIAERYNQLKLNDFAESYLLRHFQVFASTEDFLDLTSSELIKILWRDELNVEKEEYLIDFILKWVDHDLENRNGELEKLMKGLRFPLMNFDFIEGKFRTHPRWKTNKKMAKLVKTIYKGCFQIFHRINFDPYPSLKCLRYQYRLP---SQVIFLYGGWNRGRTLDTTECFNIKTGYWSPASHLKDETEGRSYFGIDQLNGEVYMAGGYNGRSYLNTIRKFNPSTKEWAS 354
            RQ+L+    +RK+ E+CDV +L     K  AH++IL+A SP F+ M T +  E +  E+ +RDI++  M  ++DF YT ++++   N   L   A  ++LA +  +C  ++K  +D +NCLG++  A+ ++  +L   A+ +   +FQ    +E+F+ L +++LI I+  DELNV  EE + + ++ WV + ++ R  +L ++++ +R PL++  F+ G   + P  K++++   LV            R      P ++  R + R P    +V+F  GGW  G  + + E ++ +T  W   + +   ++ R   G+  L+  +Y  GG++G SYLN++ +++P T +W+S
Sbjct:   52 RQTLEVINLLRKHRELCDV-VLVVGAKKIYAHRVILSACSPYFRAMFTGELAESRQTEVVIRDIDERAMELLIDFAYTSQITVEEGNVQTLLPAACLLQLAEIQEACCEFLKRQLDPSNCLGIRAFADTHSCRELLRIADKFTQHNFQEVMESEEFMLLPANQLIDIISSDELNVRSEEQVFNAVMAWVKYSIQERRPQLPQVLQHVRLPLLSPKFLVGTVGSDPLIKSDEECRDLVDEAKNYLLLPQER------PLMQGPRTRPRKPIRCGEVLFAVGGWCSGDAISSVERYDPQTNEWRMVASM---SKRRCGVGVSVLDDLLYAVGGHDGSSYLNSVERYDPKTNQWSS 394

The following BLAST results are available for this feature:

BLAST of TCONS_00004376-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004376-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
KLH20	6.750e-56	29.18	Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE...	[more]

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TCONS_00004376-protein (polypeptide) - C. hemisphaerica