TCONS_00004398-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00004398-protein
Unique Name	TCONS_00004398-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	884

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00004398-protein ID=TCONS_00004398-protein|Name=TCONS_00004398-protein|organism=Clytia hemisphaerica|type=polypeptide|length=884bp
GSPYSQHTRSDYEMATGSKRGLGACKVCFKEYSNRKKPKFCPCGNHLGGS
FTEKVVVSTADPSSVCIYEQPNGEKLLSIRVSPKGDRKFCFIGKDHKICY
DNRCLQYRTSLVTSGKVSEFKCDHMTIPISTALYRIKYFELDQLAKFTTD
LGLQREMSEIQIVDYPTVIKISKKSYAVIGKIHGHSVKYTHVTLSIHKDG
KHELLCTHADCKGKVIKQASDRKVCLHRNLVLLARNLFETGNYPGQPQQD
PVPASKKTVDEDGQSRQLKNTMQIQANKEIPYTIPPLTLNQYYLLVIRKN
ERLSFEPHETKCTLCQSPLGDSVFPQGTRSTNGNGYLITNLHSFVKVDIK
MKKCSSKDCKAAHVAYPFKNGLFNICNKVIISLDILLEFRCYFKEGVSIY
HIIGAKLDALSYKLEEANRPKYNEIRYLVDLICDGFYKFEALTKRDLNDV
ICGICGIAGRAYMGEANEKNCCALKDIDTKKTSLPSPPSQVFGTGPSINP
PPELLENCLRRIKWHLVERGTFATARSTFSLTMDEVPVMVPSMQRTIEIN
TEKEKKNDLLKDSAVLEGDALMLSKMMYDHGLSIQSLDTMQDHILKQLAE
ECGIQTMNKSKDQVKSCLLKLHTSLCTGKSLCHNVVKTPGHTGGFYRMTC
THGTTVCSKFMVYPETVRDAADLWLSLKHPPVLFMHETPCTFTRHLLNRC
PEVTERYWGDLNGCFEKPVVYEEPNGFLDVPDLTAIEYQENTQAQLQLPS
CPNNPMMQMFAHPLTNSARRYVCGETYTEKTNNHKSHLCKFHNIDLCKQA
KEIKKNFQNCNFNPKHKRRIQTAASMPNNAMMHIFHNYLHTYYKNEEIVM
KQKRELEKSSGKKIVRDSLMRFVVQQNDEQDPSH

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_002459	XLOC_002459	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00004398	TCONS_00004398	Clytia hemisphaerica	transcript

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 242..266

Blast

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BLAST of TCONS_00004398-protein vs. Swiss-Prot (Human)
Match: HMGX3 (HMG domain-containing protein 3 OS=Homo sapiens GN=HMGXB3 PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 5.372e-46
Identity = 159/587 (27.09%), Postives = 259/587 (44.12%), Query Frame = 0

Query:  305 FEPHETKCTLCQSPLGDSVFPQGTRSTNGNG--YLITNLHSFVKVDIKMKKCSSKDCKAAHVAYPFKNGLFNICNKVIISLDILLEFRCYFKEGVSIYHIIGAKLDALSYKLEEANRPKYNEIRYLVDLICDGFYKFEALTKRDLNDVICGICGIAGRAYMGEANEKNCCALKDIDTKKTSLPSPPSQVFGTGPSINPPPELLENCLRRIKWHLVERGTFATARSTFSLTMDEV-PVMVPSMQRTIEINTEKEKKNDLLKDSAVLEGDALMLSKMMYDHGLSIQSLDTMQDHILKQLAEECGIQ-TMNKSKDQVKSCLLKLHTSLCTGKSLCHNVVKTPGH-TGGFYRMTCTHGTTVCSKFMVYPETVRDAADLWLSLKHPPVLFMHETPCTFTRHLLNRC-PEVTERYWGDLNGCFEKPVVYEEPNGFLDVPDLTAIEY---QENTQAQLQLPSCPNNPMMQMFAHPLTNSA-RRYVCGETYTEKTNNHKSHLCKFHNIDLCKQAKE---IKKNFQNCNFNPKHKRRIQTAASMPNNAMMHIFHNYLHTYYKNEEIVMKQKRELEKS--SGKKIVRDSLMRFVVQQ 876
            +E   T+C LC SPL    F  G  S  G    +L+T       V  ++K C +  C A H       GLFN+ NK+++SLD+L   R   K G      I   L ++  + E+       E+  L +L+C+G++ FE LT RD ND+ICGICG+A +  M + +E+N  ALK ++           +  G+   +N     +E+    ++  ++E+  F  +          + P   P M+  + +NTEK+K  D+      + G    L +++ +    +  + +  +  L+ L  +CGI      SKDQ+   LL L+ S+  G       ++ P H TGG     C H     SK++V  E+ RD  DL  S +H P +++ +   T      + C PE+T + WG   GCF  P    EP   +  P+L    Y      T+  +Q              HP+T +A RR V         +    H    H++ LC +      I  +  +   N   +R I       +NA  +  +N L  +  + EIV +Q  ++ +S   G+ ++RD+L R  V Q
Sbjct:  988 YESPSTQCLLCSSPL----FKGGQNSLAGPQECWLLTA-SRLQTVTAQVKMCLNPHCLALHSFIDIYTGLFNVGNKLLVSLDLLFAIRNQIKLGEDPRVSINVVLKSVQEQTEKTL--TSEELSQLQELLCNGYWAFECLTVRDYNDMICGICGVAPKVEMAQRSEENVLALKSVEFTW-------PEFLGSN-EVN-----VEDFWATMETEVIEQVAFPASIPITKFDASVIAPFFPPLMRGAVVVNTEKDKNLDVQP----VPGSGSALVRLLQEGTCKLDEIGSYSEEKLQHLLRQCGIPFGAEDSKDQLCFSLLALYESVQNGA----RAIRPPRHFTGGKIYKVCPHQVVCGSKYLVRGESARDHVDLLASSRHWPPVYVVDM-ATSVALCADLCYPELTNQMWGRNQGCFSSPT---EPPVSVSCPELLDQHYTVDMTETEHSIQ--------------HPVTKTATRRIVHAGLQPNPGDPSAGH----HSLALCPELAPYATILASIVDSKPNGVRQRPIAF-----DNATHYYLYNRLMDFLTSREIVNRQIHDIVQSCQPGEVVIRDTLYRLGVAQ 1519

The following BLAST results are available for this feature:

BLAST of TCONS_00004398-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00004398-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
HMGX3	5.372e-46	27.09	HMG domain-containing protein 3 OS=Homo sapiens GN...	[more]

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TCONS_00004398-protein (polypeptide) - C. hemisphaerica