TCONS_00004427-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004427-protein
Unique NameTCONS_00004427-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length569

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004427-protein ID=TCONS_00004427-protein|Name=TCONS_00004427-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp
MGNYIPFAMGLNQTDSNGIENLDGSNASTYRYPPKSGAYFANHFVMAGER
FDNINSETFLFGENNDLNYLSSKPVPFPYHSPSENEPSHTIRCMVHLRKD
SLKMIREKNDVEQGAGEAASDKYHLQFTFDSDIDCAVRIFMMAKEEITDG
AAEYLSRKPELVAEPVFFTKGSGQNFNNTEFKITPDDFQPAELSYVAGSQ
EIPLIIQITSEDPEYPGHSESTIAGIEKLSDGSYTIKFMKQKIMVDGFSM
MLQELYGIENKNNANGKIDDEDDVEDDTTECVVCMSSLRDTVMLPCRHLC
LCSDCAGHMRNKQSRCPICRANFYALLQIKGVRKNPQGTVSSPEEYEEVT
LIEALNGKLNAGQSTDTGSLKRNTSSRSNRSRKSLKARLGSSSKSLRSAL
SSTPSSPTLEKRSEGEDYSDEKSETHQELDVQVVQIPERAPNPVPPHTVD
LPESFSYSPPATPDDQDEEPTIVIDPKTLLRDTSIDEAAPSPTDSSKHQQ
AEVSLPGTPMDSDQSYELGASGNSSVFFNSSKGSLVIATRAQVTTPSHIN
LGSHSPPQNHEGPANEEHL
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002476XLOC_002476Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004427TCONS_00004427Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 281..319
e-value: 3.5E-4
score: 29.9
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 281..320
score: 11.825
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 281..323
e-value: 1.79214E-9
score: 53.2184
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 279..322
e-value: 4.5E-14
score: 51.9
NoneNo IPR availableGENE3D1.10.1170.10coord: 77..330
e-value: 3.1E-15
score: 56.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 360..522
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 546..569
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 280..327

Blast
[Close]
BLAST of TCONS_00004427-protein vs. Swiss-Prot (Human)
Match: RN157 (RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=1 SV=3)

HSP 1 Score: 311.227 bits (796), Expect = 1.174e-97
Identity = 156/369 (42.28%), Postives = 228/369 (61.79%), Query Frame = 0 
Query:   18 GIENLDGSNASTYRYPPKSGAYFANHFVMAGERFDNINSETFLFGENNDLNYLSSKPVPFPYHSPSENEPSHTIRCMVHLRKDSLKMIREKNDVEQGAGEAASDK--YHLQFTFDSDIDCAVRIFMMAKEEITDGAAEYLSRKPELVAEPVFFTKGSGQNFNNTEFKITPDDFQPAELSYVAGSQEIPLIIQ-ITSEDPEYPGHSESTIAGIEKLSDGSYTIKFMKQKIMVDGFSMMLQELYGIENKNNANGKIDDEDDVEDDTTECVVCMSSLRDTVMLPCRHLCLCSDCAGHMRNKQSRCPICRANFYALLQIKGVRK----------NPQGTVSS--------------PEEYEEVTLIEALNGKL 359
            G+E +D  + S YRYPPKSG+YFA+HF+M GE+FD+ + E +LFGEN+DLN+L ++PV FPY +P   EP  T+R +V++RKD+L++++   +V+    EA+  K  Y+++FTFD+D   A+ I+  A EE  +G A Y+ +   L +E V + +G  Q F      + P ++   EL +    +  PL++  +  E  EY GH    +   EK +DG++ +K +KQK +VDG S +LQE+YGIENK N       ED+V D++ ECVVC+S +RDT++LPCRHLCLC+ CA  +R + + CPICR  F ALLQI+ +RK          NP   +SS              P  YE V+L+EALNG L
Sbjct:   11 GVEEVDIPSNSVYRYPPKSGSYFASHFIMGGEKFDSTHPEGYLFGENSDLNFLGNRPVVFPYAAPPPQEPVKTLRSLVNIRKDTLRLVKCAEEVKSPGEEASKAKVHYNVEFTFDTDARVAITIYYQATEEFQNGIASYIPKDNSLQSETVQYKRGVCQQFCLPSHTVDPSEWAEEELGFDLDREVYPLVVHAVVDEGDEYFGHCHVLLGTFEKHTDGTFCVKPLKQKQVVDGVSYLLQEIYGIENKYNTQDSKVAEDEVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRLPFRALLQIRAMRKKLGPLSPTSFNP--IISSQTSDSEEHPSSENIPPGYEVVSLLEALNGPL 377
The following BLAST results are available for this feature:
BLAST of TCONS_00004427-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1571.174e-9742.28RING finger protein 157 OS=Homo sapiens GN=RNF157 ... [more]
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