TCONS_00004488-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004488-protein
Unique NameTCONS_00004488-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1105

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004488-protein ID=TCONS_00004488-protein|Name=TCONS_00004488-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1105bp
MANRYNDPGAVDNSIQITSEKVIDLLNQTQGAKSESKVGFLKQIQELVLN
KNPTLLDNFLDEILIYQQDRSSDVRKFVVVFIEEACKKDPELLPKTIGCL
SYMISDENTTVAKRVMLACNSLYKVALQLVCKLRTIKQDIQDMWEMMTDL
KRQICGMIESENDGVRTHTIKFMEMLILVHSKSGQSSDDRKKDDISIDIV
PSNHPLVKYDDLISEGLTTMEALLALCGSPNISSVNLMAVLSSLTSIGKQ
RFTFLSTVVQAFELLHANLPPTLSKSQVSSVRKNIKMQLFTLIKLPESES
YVTQIGTLLTDLGATPSEIQKSLPKVTESRKRRAEEEARAAKKSRKNEDG
SSGQFSLSKAIELTTADIVPRLTKEVVTDVVLVSMLFLPRSLPVQFQETF
TPIAAAGSSSQVDHLGRLMATQMTNAGIGVGIERAKEIATNEAKALKQAK
KKNRKQEEKEESKSTTSSSTSSKMADKGMEKLSAKDTRSIRDIAAELKSG
SKTQQDSSGRMRKIKPFKLSAAALPLGRKKTSEMLHMAFKRILKSDKQAM
VAGTTVERYKIIVGLAMQFYGDLTQALIDFVMEDFRSRIDLGILWLYQEY
VKAESQTPGSSMNENSQYALCLNSLLKGMRRCLEPRDKSFTRFLLEAPTL
PNSVTKVIKDYCIDSERIMIGFSTLRELISKSPARSNVWLQLLMELTTAQ
KEQVRVQAIHSAKKLHTQDDFTDLIEDFARYSVQQLTLAEPPPQEKPTDE
ELLEGKREWTEESIKAYLYLYLALLPSNHSLFLNLADVYVDSAPITKKTI
LRHLEHPVRAIGMNSPELLMLVEKCPAGAETLVTRVLHIVTDKNPPTNEL
VQKVKELYNKRVSDVRFLIPVLNGLQKHEVVEVLPKLITQSPNVVKEVFN
RLLGSFQSGASAQKPPVSPSELLVSLHTIESKSDVKAIMKAINICFGEKE
LYTQEVLAVVIQQLIDITPLPTLFMRTVIQSLGMCPRLVGFVMNILSKLI
NKQVWKYPKVWQGFVKCCQMTKPQSYPILLQLPPKQLESVFKICPELKPL
LVAHIENMTANQRGHISKNIIQMFEKDEASTSSSRGGYSSATFSSSATSS
KMDTD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002529XLOC_002529Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004488TCONS_00004488Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022075Symplekin_C
IPR011989ARM-like
IPR032460Symplekin/Pta1_N
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 432..466
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 320..354
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 444..485
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1080..1105
IPR022075Symplekin C-terminalPFAMPF12295Symplekin_Ccoord: 864..1043
e-value: 3.8E-69
score: 232.4
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 11..1047
e-value: 1.8E-21
score: 75.7
IPR032460Symplekin/Pta1, N-terminalPFAMPF11935DUF3453coord: 109..328
e-value: 1.0E-55
score: 188.7
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 42..182
coord: 877..996
coord: 214..319
coord: 822..847
coord: 651..731

Blast
BLAST of TCONS_00004488-protein vs. Swiss-Prot (Human)
Match: SYMPK (Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2)

HSP 1 Score: 927.932 bits (2397), Expect = 0.000e+0
Identity = 490/1079 (45.41%), Postives = 698/1079 (64.69%), Query Frame = 0
Query:   18 TSEKVIDLLNQTQGAKSESKVGFLKQIQELVLNKNPTLLDNFLDEILIYQQDRSSDVRKFVVVFIEEACKKDPELLPKTIGCLSYMISDENTTVAKRVMLACNSLYKVALQLVCKLRTIKQDIQDMWEMMTDLKRQICGMIESENDGVRTHTIKFMEMLILVHSKSGQSSD--DRKKDDISIDIVPSNHPLVKYDDLISEGLTTMEALLALCGSPNISSVNLMAVLSSLTSIGKQRFTFLSTVVQAFELLHANLPPTLSKSQVSSVRKNIKMQLFTLIKLPESESYVTQIGTLLTDLGATPSEIQKSLPKVTESRKRRAEEEARAAKKSR-------KNED-----GSSG------QFSLSKAIELTTADIVPRLTKEVVTDVVLVSMLFLPRSLPVQFQETFTPIAAAGSSSQVDHLGRLMATQMTNAGIGVGIERAKEIATNEAKALKQAKKKNRKQEEKEESKSTTSSSTSSKMADKGMEKLSAKDTRSIRDIAAELKSGSKTQQDSSGRMRKIKPFKLSAAALPLGRKKTSEMLHMAFKRILKSDKQAMVAGTTVERYKIIVGLAMQFYGDLTQALIDFVMEDFRSRIDLGILWLYQEYVKAESQTPGSSMNENSQYALCLNSLLKGMRRCLEPRDKSFTRFLLEAPTLPNSVTKVIKDYCIDSERIMIGFSTLRELISKSPARSNVWLQLLMELTTAQKEQVRVQAIHSAKKLHTQDDFTDLIEDFARYSVQQLTLAEPPPQEKPTDEELLEGKREWTEESIKAYLYLYLALLPSNHSLFLNLADVYVDSAPITKKTILRHLEHPVRAIGMNSPELLMLVEKCPAGAETLVTRVLHIVTDKNPPTNELVQKVKELYNKRVSDVRFLIPVLNGLQKHEVVEVLPKLITQSPNVVKEVFNRLLGSFQSGASAQKPPVSPSELLVSLHTIES-KSDVKAIMKAINICFGEKELYTQEVLAVVIQQLIDITPLPTLFMRTVIQSLGMCPRLVGFVMNILSKLINKQVWKYPKVWQGFVKCCQMTKPQSYPILLQLPPKQLESVFKICPELKPLLVAHIENMTANQRGHISKNIIQMFE 1075
            TSE+V+DLLNQ     ++SK+  LKQ+QEL++NK+PTLLDNFLDEI+ +Q D+S +VRKFV+ FIEEACK+D ELL K I  L+ ++ DEN  V K+ +L    LYKVALQ + K R I +  +  W+M++ +   I  +++S+NDG+RTH IKF+E LI+  S     S+   R++ DIS+D +P +HP ++Y+ L  EG   +E LL     P ISS+NL   L SL +I +QR  F+S V+QA+E LHANLPPTL+KSQVSSVRKN+K+ L +++K P S  +  QI TLL DLG   +EI +++P   ++RKR  ++     KK +        +ED     G SG      Q S     ++T   + P LT + V ++VL+SM++LP ++P  FQ  +TP+ +AG+ +Q+ HL RLMATQMT AG+G G+E+ K+    E K  K  K ++   + +  ++    S   S  +   +E+ + +  R    I         TQ   +G   + K F+LS    PL   +   M   A KRIL+++K    +G    R KI+  L  QF   L   ++ F++ED R+R+DL   WLYQEY    +     S++   +Y  CL  LL G++   + +D  FT+ +LEAP +  S  +V++ YC D  R  +G STLR+LI K P+R   +L +L++L++ +K++VR QA+   K+++ ++   + +E FA   +Q L    PP      D++  E    WTEE++K  LYLYLALLP NH L   LA VY ++    K+T+LR +E P+R +GMNSPELL+LVE CP GAETLVTR LH +TDK PP+ ELV++V++LY+KR+ DVRFLIPVLNGL+K EV++ LPKLI  +P VVKEVFNRLLG+     ++   P++P ELL++LH I+S K D+K+I+KA N+CF E+ +YT EVLAVV+QQL++ +PLP L MRTVIQSL M PRL GFVMNILS+LI KQVWKYPKVW+GF+KCCQ TKPQS+ ++LQLPP+QL +VF  CPEL+  L+AH+ + T +Q+ HI  +I+ + E
Sbjct:   32 TSERVVDLLNQAALITNDSKITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAKSQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDTRKRPRDDSDSTLKKMKLEPNLGEDDEDKDLEPGPSGTSKASAQISGQSDTDITAEFLQPLLTPDNVANLVLISMVYLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQ-CKEEPKEEKVVKTESVLIKRRLSAQGQAISVVGSLSSMSPLEEEAPQAKRRPEPII------PVTQPRLAGAGGRKKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILASLVTQFNSGLKAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGSLD---KYEDCLIRLLSGLQEKPDQKDGIFTKVVLEAPLITESALEVVRKYCEDESRTYLGMSTLRDLIFKRPSRQFQYLHVLLDLSSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFGADKDT-EVAAPWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPIRGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFLIPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHNIDSVKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPRLGGFVMNILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPELREPLLAHVRSFTPHQQAHIPNSIMTILE 1099          
The following BLAST results are available for this feature:
BLAST of TCONS_00004488-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYMPK0.000e+045.41Symplekin OS=Homo sapiens GN=SYMPK PE=1 SV=2[more]
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